Variant report

Variant	rs685997
Chromosome Location	chr6:36540921-36540922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36539071..36541420-chr6:36578039..36580553,2	K562	blood:
2	chr6:36538389..36544873-chr6:36560913..36564141,7	K562	blood:
3	chr6:36524459..36530212-chr6:36535986..36541139,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1617092	0.98[AFR][1000 genomes]
rs1744648	1.00[AMR][1000 genomes]
rs1744661	1.00[AMR][1000 genomes]
rs1794623	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1794626	1.00[AMR][1000 genomes]
rs582922	1.00[AMR][1000 genomes]
rs594369	1.00[AMR][1000 genomes]
rs594980	1.00[AMR][1000 genomes]
rs594999	1.00[AMR][1000 genomes]
rs596879	1.00[AMR][1000 genomes]
rs596907	1.00[AMR][1000 genomes]
rs600382	1.00[AMR][1000 genomes]
rs600461	1.00[AMR][1000 genomes]
rs605925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs606601	1.00[AMR][1000 genomes]
rs606781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs607009	1.00[AMR][1000 genomes]
rs607735	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs609612	1.00[AMR][1000 genomes]
rs609933	0.94[AFR][1000 genomes]
rs611583	1.00[AMR][1000 genomes]
rs611661	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs612098	1.00[AMR][1000 genomes]
rs614001	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs622171	0.98[AFR][1000 genomes]
rs623413	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs624670	1.00[AMR][1000 genomes]
rs626511	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs628564	1.00[AMR][1000 genomes]
rs629469	1.00[AMR][1000 genomes]
rs638411	0.98[AFR][1000 genomes]
rs643877	0.98[AFR][1000 genomes]
rs644634	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs646501	0.98[AFR][1000 genomes]
rs651070	0.98[AFR][1000 genomes]
rs651144	0.98[AFR][1000 genomes]
rs651553	0.98[AFR][1000 genomes]
rs652896	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs653077	1.00[AMR][1000 genomes]
rs655573	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs656049	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs659189	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs667632	1.00[AMR][1000 genomes]
rs668023	1.00[AMR][1000 genomes]
rs668460	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs668553	1.00[AMR][1000 genomes]
rs669779	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs674713	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs675619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs682937	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs684354	1.00[AMR][1000 genomes]
rs684482	1.00[AMR][1000 genomes]
rs685109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs685261	1.00[AMR][1000 genomes]
rs686057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs686478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs688126	1.00[AMR][1000 genomes]
rs9296190	0.91[AFR][1000 genomes]
rs9470315	1.00[AMR][1000 genomes]
rs9470318	1.00[AMR][1000 genomes]
rs9470327	0.95[AFR][1000 genomes]
rs9470328	0.98[AFR][1000 genomes]
rs9470329	0.95[AFR][1000 genomes]
rs9470331	0.98[AFR][1000 genomes]
rs9470332	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
2	nsv350009	chr6:36539364-36541435	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36535000-36546400	Weak transcription	Fetal Intestine Large	intestine
2	chr6:36535000-36546800	Weak transcription	Primary B cells from cord blood	blood
3	chr6:36535200-36551200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:36535600-36541000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:36539600-36541400	Enhancers	Hela-S3	cervix
6	chr6:36539600-36541400	Enhancers	HepG2	liver
7	chr6:36539800-36541000	Enhancers	Fetal Intestine Small	intestine
8	chr6:36540000-36547800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:36540200-36541400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:36540200-36542000	Enhancers	Placenta	Placenta
11	chr6:36540400-36541400	Enhancers	A549	lung

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