Variant report

Variant	rs655573
Chromosome Location	chr6:36537001-36537002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36524459..36530212-chr6:36535986..36541139,5	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1617092	0.91[AFR][1000 genomes]
rs1744648	1.00[AMR][1000 genomes]
rs1744661	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1794623	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1794624	0.84[AFR][1000 genomes]
rs1794626	1.00[AMR][1000 genomes]
rs582922	1.00[AMR][1000 genomes]
rs594369	1.00[AMR][1000 genomes]
rs594980	1.00[AMR][1000 genomes]
rs594999	1.00[AMR][1000 genomes]
rs596879	1.00[AMR][1000 genomes]
rs596907	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs600382	1.00[AMR][1000 genomes]
rs600461	1.00[AMR][1000 genomes]
rs605925	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs606601	1.00[AMR][1000 genomes]
rs606781	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs607009	1.00[AMR][1000 genomes]
rs607735	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs609612	1.00[AMR][1000 genomes]
rs609933	0.87[AFR][1000 genomes]
rs611583	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs611661	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs612098	1.00[AMR][1000 genomes]
rs614001	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs622171	0.91[AFR][1000 genomes]
rs623413	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs624670	1.00[AMR][1000 genomes]
rs626511	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs628564	1.00[AMR][1000 genomes]
rs629469	1.00[AMR][1000 genomes]
rs638411	0.91[AFR][1000 genomes]
rs643877	0.91[AFR][1000 genomes]
rs644634	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs646501	0.91[AFR][1000 genomes]
rs651070	0.91[AFR][1000 genomes]
rs651144	0.91[AFR][1000 genomes]
rs651553	0.91[AFR][1000 genomes]
rs652896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs653077	1.00[AMR][1000 genomes]
rs656049	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs659189	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs667632	1.00[AMR][1000 genomes]
rs668023	1.00[AMR][1000 genomes]
rs668460	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs668553	1.00[AMR][1000 genomes]
rs669779	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs674713	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs675619	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs682937	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs684354	1.00[AMR][1000 genomes]
rs684482	1.00[AMR][1000 genomes]
rs685109	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs685261	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs685997	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs686057	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs686478	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs688126	1.00[AMR][1000 genomes]
rs9296190	0.84[AFR][1000 genomes]
rs9462199	0.80[AFR][1000 genomes]
rs9470315	1.00[AMR][1000 genomes]
rs9470318	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470327	0.88[AFR][1000 genomes]
rs9470328	0.91[AFR][1000 genomes]
rs9470329	0.88[AFR][1000 genomes]
rs9470331	0.91[AFR][1000 genomes]
rs9470332	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36525800-36540200	Weak transcription	Placenta	Placenta
2	chr6:36534800-36538000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:36535000-36546400	Weak transcription	Fetal Intestine Large	intestine
4	chr6:36535000-36546800	Weak transcription	Primary B cells from cord blood	blood
5	chr6:36535200-36537800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:36535200-36551200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:36535600-36541000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:36536600-36537800	Weak transcription	GM12878-XiMat	blood
9	chr6:36537000-36537400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:36537000-36537400	Enhancers	HepG2	liver

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