Variant report

Variant	rs651553
Chromosome Location	chr6:36544446-36544447
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36538389..36544873-chr6:36560913..36564141,7	K562	blood:
2	chr6:36543022..36549115-chr6:36560475..36565724,11	K562	blood:
3	chr6:36474397..36477191-chr6:36544292..36546123,2	MCF-7	breast:
4	chr6:36524883..36528605-chr6:36543628..36546021,5	MCF-7	breast:
5	chr6:36541858..36549149-chr6:36558071..36568608,24	MCF-7	breast:
6	chr6:36513307..36516814-chr6:36543552..36549139,6	MCF-7	breast:
7	chr6:36513376..36516513-chr6:36543508..36548000,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction
ENSG00000112079	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1617092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1794623	0.88[AFR][1000 genomes]
rs596907	0.85[LWK][hapmap];1.00[YRI][hapmap]
rs600382	0.81[LWK][hapmap]
rs600461	0.85[LWK][hapmap]
rs605925	0.98[AFR][1000 genomes]
rs606781	0.98[AFR][1000 genomes]
rs607735	0.94[AFR][1000 genomes]
rs609933	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs614001	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs622171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs638411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs643877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs644634	0.93[AFR][1000 genomes]
rs646501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs651070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs651144	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs652896	0.91[AFR][1000 genomes]
rs655573	0.91[AFR][1000 genomes]
rs656049	0.95[AFR][1000 genomes]
rs658258	0.81[AFR][1000 genomes]
rs668460	0.95[AFR][1000 genomes]
rs669779	1.00[ASW][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs674713	0.96[AFR][1000 genomes]
rs675619	0.98[AFR][1000 genomes]
rs682937	0.95[AFR][1000 genomes]
rs684482	0.85[LWK][hapmap]
rs685109	1.00[ASW][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs685997	0.98[AFR][1000 genomes]
rs686057	0.98[AFR][1000 genomes]
rs686478	0.98[AFR][1000 genomes]
rs7774108	0.82[YRI][hapmap]
rs9296189	0.87[ASW][hapmap];0.85[YRI][hapmap]
rs9296190	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470315	0.81[LWK][hapmap]
rs9470327	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470329	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470331	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36535000-36546400	Weak transcription	Fetal Intestine Large	intestine
2	chr6:36535000-36546800	Weak transcription	Primary B cells from cord blood	blood
3	chr6:36535200-36551200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:36540000-36547800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:36541000-36544600	Weak transcription	Fetal Intestine Small	intestine
6	chr6:36542800-36545200	Enhancers	HepG2	liver
7	chr6:36544000-36544800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:36544000-36545400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:36544000-36548000	Enhancers	Placenta	Placenta
10	chr6:36544200-36548400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:36544400-36544600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:36544400-36544600	Enhancers	A549	lung
13	chr6:36544400-36545000	Enhancers	Hela-S3	cervix
14	chr6:36544400-36545400	Enhancers	Fetal Muscle Leg	muscle
15	chr6:36544400-36545400	Enhancers	Fetal Stomach	stomach
16	chr6:36544400-36545400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr6:36544400-36545600	Enhancers	HSMMtube	muscle
18	chr6:36544400-36545800	Enhancers	HSMM	muscle
19	chr6:36544400-36546400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:36544400-36546800	Enhancers	HMEC	breast
21	chr6:36544400-36547400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:36544400-36547400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:36544400-36547400	Enhancers	Osteobl	bone
24	chr6:36544400-36548200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:36544400-36548200	Enhancers	Muscle Satellite Cultured Cells	--

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