Variant report

Variant	rs643877
Chromosome Location	chr6:36543818-36543819
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1617092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1794623	0.88[AFR][1000 genomes]
rs605925	0.98[AFR][1000 genomes]
rs606781	0.98[AFR][1000 genomes]
rs607735	0.94[AFR][1000 genomes]
rs609933	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs614001	0.95[AFR][1000 genomes]
rs622171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs638411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs644634	0.93[AFR][1000 genomes]
rs646501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs651070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs651144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs651553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs652896	0.91[AFR][1000 genomes]
rs655573	0.91[AFR][1000 genomes]
rs656049	0.95[AFR][1000 genomes]
rs658258	0.81[AFR][1000 genomes]
rs668460	0.95[AFR][1000 genomes]
rs669779	0.95[AFR][1000 genomes]
rs674713	0.96[AFR][1000 genomes]
rs675619	0.98[AFR][1000 genomes]
rs682937	0.95[AFR][1000 genomes]
rs685109	0.98[AFR][1000 genomes]
rs685997	0.98[AFR][1000 genomes]
rs686057	0.98[AFR][1000 genomes]
rs686478	0.98[AFR][1000 genomes]
rs9296190	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470327	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470329	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36535000-36546400	Weak transcription	Fetal Intestine Large	intestine
2	chr6:36535000-36546800	Weak transcription	Primary B cells from cord blood	blood
3	chr6:36535200-36551200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:36540000-36547800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:36541000-36544600	Weak transcription	Fetal Intestine Small	intestine
6	chr6:36541400-36544400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:36541400-36544400	Weak transcription	A549	lung
8	chr6:36541400-36544400	Weak transcription	Hela-S3	cervix
9	chr6:36542000-36544000	Weak transcription	Placenta	Placenta
10	chr6:36542400-36544000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:36542800-36545200	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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