Variant report

Variant	rs7775430
Chromosome Location	chr6:167513222-167513223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167508063..167510526-chr6:167511244..167513696,2	K562	blood:
2	chr6:167511835..167514028-chr6:167517104..167518840,2	K562	blood:

Extended variants
information (count: 137 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs16899770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs16899771	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs16899777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs16899781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs16899788	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16899799	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16899801	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16899809	1.00[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs16899811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs16899812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs16899821	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16899825	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16899828	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16899831	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs16899833	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16899835	1.00[AMR][1000 genomes]
rs16899837	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17856382	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs2273746	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs2282859	1.00[CEU][hapmap]
rs34585172	1.00[AMR][1000 genomes]
rs3752519	1.00[AMR][1000 genomes]
rs375883	1.00[JPT][hapmap]
rs3798305	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap]
rs3798308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs3798309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs3798310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs3798311	1.00[AMR][1000 genomes]
rs3798312	1.00[AMR][1000 genomes]
rs3798313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs3822914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs41269603	1.00[AMR][1000 genomes]
rs41269605	1.00[AMR][1000 genomes]
rs41269607	1.00[AMR][1000 genomes]
rs56028052	1.00[AMR][1000 genomes]
rs56266102	1.00[AMR][1000 genomes]
rs61751042	1.00[AMR][1000 genomes]
rs6922071	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs73023509	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73023517	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73024229	1.00[AMR][1000 genomes]
rs73024302	1.00[AMR][1000 genomes]
rs73026203	1.00[AMR][1000 genomes]
rs73026206	1.00[AMR][1000 genomes]
rs73026210	1.00[AMR][1000 genomes]
rs73026212	1.00[AMR][1000 genomes]
rs73026214	1.00[AMR][1000 genomes]
rs73026216	1.00[AMR][1000 genomes]
rs73026224	1.00[AMR][1000 genomes]
rs73026225	1.00[AMR][1000 genomes]
rs73026226	1.00[AMR][1000 genomes]
rs73026230	1.00[AMR][1000 genomes]
rs73026236	1.00[AMR][1000 genomes]
rs73026238	1.00[AMR][1000 genomes]
rs73026240	1.00[AMR][1000 genomes]
rs73026241	1.00[AMR][1000 genomes]
rs73026247	1.00[AMR][1000 genomes]
rs73026249	1.00[AMR][1000 genomes]
rs73026251	1.00[AMR][1000 genomes]
rs73028276	1.00[AMR][1000 genomes]
rs73028277	1.00[AMR][1000 genomes]
rs73028278	1.00[AMR][1000 genomes]
rs73028283	1.00[AMR][1000 genomes]
rs73028285	1.00[AMR][1000 genomes]
rs73028286	1.00[AMR][1000 genomes]
rs73028287	1.00[AMR][1000 genomes]
rs73028288	1.00[AMR][1000 genomes]
rs73028290	1.00[AMR][1000 genomes]
rs73028292	1.00[AMR][1000 genomes]
rs73028293	1.00[AMR][1000 genomes]
rs73028295	1.00[AMR][1000 genomes]
rs73028297	1.00[AMR][1000 genomes]
rs73028298	1.00[AMR][1000 genomes]
rs73028301	1.00[AMR][1000 genomes]
rs73030105	1.00[AMR][1000 genomes]
rs73030106	1.00[AMR][1000 genomes]
rs73030108	1.00[AMR][1000 genomes]
rs73030112	1.00[AMR][1000 genomes]
rs73030117	1.00[AMR][1000 genomes]
rs73030122	1.00[AMR][1000 genomes]
rs73030125	1.00[AMR][1000 genomes]
rs73030128	1.00[AMR][1000 genomes]
rs73030129	1.00[AMR][1000 genomes]
rs73031587	1.00[AMR][1000 genomes]
rs73031588	1.00[AMR][1000 genomes]
rs73031589	1.00[AMR][1000 genomes]
rs73031596	1.00[AMR][1000 genomes]
rs73033003	1.00[AMR][1000 genomes]
rs73033006	1.00[AMR][1000 genomes]
rs73033009	1.00[AMR][1000 genomes]
rs73033012	1.00[AMR][1000 genomes]
rs73033013	1.00[AMR][1000 genomes]
rs73033017	1.00[AMR][1000 genomes]
rs73033024	1.00[AMR][1000 genomes]
rs73033025	1.00[AMR][1000 genomes]
rs73033027	1.00[AMR][1000 genomes]
rs73033031	1.00[AMR][1000 genomes]
rs73033033	1.00[AMR][1000 genomes]
rs73033036	1.00[AMR][1000 genomes]
rs73033038	1.00[AMR][1000 genomes]
rs73035055	1.00[AMR][1000 genomes]
rs73035056	1.00[AMR][1000 genomes]
rs73035058	1.00[AMR][1000 genomes]
rs73035071	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73035084	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73035085	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73035091	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73037103	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73039135	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73039146	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73039164	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73039174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73039179	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73039184	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73041151	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73041158	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73041161	0.94[EUR][1000 genomes]
rs73043118	1.00[AMR][1000 genomes]
rs73043122	1.00[AMR][1000 genomes]
rs73043135	1.00[AMR][1000 genomes]
rs73043163	1.00[AMR][1000 genomes]
rs7775261	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9459881	1.00[CEU][hapmap];0.87[GIH][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
4	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
6	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
7	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
8	esv2752099	chr6:167448181-167579102	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1018193	chr6:167491589-167797294	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv538544	chr6:167491589-167797294	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv469673	chr6:167500376-167658532	Flanking Active TSS Genic enhancers Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv482439	chr6:167500376-167658532	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	esv2758094	chr6:167501204-167845935	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
14	esv2759492	chr6:167501204-168176733	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7775430	FGFR1OP	cis	lymphoblastoid	seeQTL

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167503600-167527200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:167508600-167515200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:167509000-167516400	Enhancers	Primary B cells from cord blood	blood
4	chr6:167509000-167525200	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:167509400-167516000	Weak transcription	Stomach Mucosa	stomach
6	chr6:167509800-167513400	Enhancers	GM12878-XiMat	blood
7	chr6:167509800-167516200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:167510000-167516600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:167511200-167517400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:167511800-167513400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:167511800-167513400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:167511800-167513400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr6:167511800-167513600	Enhancers	Placenta Amnion	Placenta Amnion
14	chr6:167512600-167518800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:167512800-167513400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:167512800-167515200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:167512800-167515800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:167512800-167515800	Weak transcription	Spleen	Spleen
19	chr6:167512800-167516600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr6:167512800-167516600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:167512800-167518000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:167512800-167518400	Weak transcription	Thymus	Thymus
23	chr6:167513000-167513400	Weak transcription	Fetal Thymus	thymus
24	chr6:167513000-167516400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr6:167513200-167513400	Enhancers	K562	blood
26	chr6:167513200-167515000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr6:167513200-167516200	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr6:167513200-167516400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:167513200-167516400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr6:167513200-167516400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links