Variant report

Variant	rs7789961
Chromosome Location	chr7:140308432-140308433
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140306776..140309175-chr7:140310789..140312888,2	K562	blood:
2	chr7:140301959..140304839-chr7:140305867..140308448,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146966	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10264061	0.91[EUR][1000 genomes]
rs10270838	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs269260	1.00[ASN][1000 genomes]
rs56942922	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57570112	0.91[EUR][1000 genomes]
rs57916123	1.00[ASN][1000 genomes]
rs61369053	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943180	1.00[ASN][1000 genomes]
rs6947111	0.91[EUR][1000 genomes]
rs6971144	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73483908	1.00[ASN][1000 genomes]
rs73498495	1.00[ASN][1000 genomes]
rs73498497	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498501	1.00[ASN][1000 genomes]
rs73500409	1.00[ASN][1000 genomes]
rs73500413	1.00[ASN][1000 genomes]
rs73500418	1.00[ASN][1000 genomes]
rs73500424	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73500426	1.00[ASN][1000 genomes]
rs73736619	0.82[EUR][1000 genomes]
rs7776899	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7787030	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7787161	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7794206	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7796944	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811087	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9942679	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1021133	chr7:140270797-140338653	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029128	chr7:140293389-140335570	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140267800-140326000	Weak transcription	Gastric	stomach
2	chr7:140287600-140326000	Weak transcription	Fetal Brain Male	brain
3	chr7:140296000-140326000	Weak transcription	Fetal Heart	heart
4	chr7:140297600-140313600	Weak transcription	Fetal Kidney	kidney
5	chr7:140302200-140326200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:140302400-140326200	Weak transcription	Fetal Brain Female	brain
7	chr7:140302800-140326000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:140303800-140310800	Enhancers	NHDF-Ad	bronchial
9	chr7:140304200-140312200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:140305000-140308800	Genic enhancers	Fetal Muscle Trunk	muscle
11	chr7:140305000-140309200	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr7:140305200-140308800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr7:140305200-140308800	Genic enhancers	Fetal Stomach	stomach
14	chr7:140305200-140308800	Enhancers	NHLF	lung
15	chr7:140305200-140309000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:140305400-140310600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:140305400-140311200	Genic enhancers	Fetal Muscle Leg	muscle
18	chr7:140305600-140308800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:140305600-140309200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr7:140305600-140314200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr7:140305800-140309600	Weak transcription	A549	lung
22	chr7:140306400-140308800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr7:140306400-140309000	Enhancers	Adipose Nuclei	Adipose
24	chr7:140306800-140308800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr7:140307200-140308800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:140307400-140309600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr7:140307600-140308800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:140307600-140308800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr7:140307600-140309000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:140307600-140326000	Weak transcription	Spleen	Spleen
31	chr7:140307800-140308600	Weak transcription	Lung	lung
32	chr7:140307800-140308800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:140307800-140309800	Weak transcription	Placenta	Placenta
34	chr7:140307800-140310400	Weak transcription	Right Atrium	heart
35	chr7:140307800-140310600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr7:140307800-140310600	Weak transcription	Left Ventricle	heart
37	chr7:140307800-140311400	Weak transcription	HSMMtube	muscle
38	chr7:140307800-140316800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr7:140307800-140320400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr7:140308000-140309400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr7:140308000-140310400	Weak transcription	Fetal Lung	lung
42	chr7:140308000-140310400	Weak transcription	Ovary	ovary
43	chr7:140308000-140311400	Weak transcription	HMEC	breast
44	chr7:140308000-140311800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr7:140308000-140320400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr7:140308200-140309400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:140308200-140309600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr7:140308200-140309600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr7:140308200-140309600	Weak transcription	NH-A	brain
50	chr7:140308200-140309800	Weak transcription	HSMM	muscle

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