Variant report

Variant	rs7796944
Chromosome Location	chr7:140313726-140313727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10264061	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270838	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs269260	1.00[ASN][1000 genomes]
rs56942922	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57570112	1.00[EUR][1000 genomes]
rs57916123	1.00[ASN][1000 genomes]
rs61369053	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943180	1.00[ASN][1000 genomes]
rs6947111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6971144	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73483908	1.00[ASN][1000 genomes]
rs73498495	1.00[ASN][1000 genomes]
rs73498497	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498501	1.00[ASN][1000 genomes]
rs73500409	1.00[ASN][1000 genomes]
rs73500413	1.00[ASN][1000 genomes]
rs73500418	1.00[ASN][1000 genomes]
rs73500424	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73500426	1.00[ASN][1000 genomes]
rs73736619	0.90[EUR][1000 genomes]
rs7776899	1.00[EUR][1000 genomes]
rs7787030	1.00[EUR][1000 genomes]
rs7787161	1.00[EUR][1000 genomes]
rs7789961	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794206	1.00[EUR][1000 genomes]
rs7811087	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9942679	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1021133	chr7:140270797-140338653	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029128	chr7:140293389-140335570	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140267800-140326000	Weak transcription	Gastric	stomach
2	chr7:140287600-140326000	Weak transcription	Fetal Brain Male	brain
3	chr7:140296000-140326000	Weak transcription	Fetal Heart	heart
4	chr7:140302200-140326200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:140302400-140326200	Weak transcription	Fetal Brain Female	brain
6	chr7:140302800-140326000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:140305600-140314200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:140307600-140326000	Weak transcription	Spleen	Spleen
9	chr7:140307800-140316800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:140307800-140320400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:140308000-140320400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr7:140308400-140324000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr7:140308800-140314400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr7:140308800-140322800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:140308800-140323800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:140310800-140320600	Weak transcription	NHDF-Ad	bronchial
17	chr7:140310800-140323800	Weak transcription	Fetal Lung	lung
18	chr7:140310800-140326400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr7:140311000-140320400	Weak transcription	NH-A	brain
20	chr7:140311200-140314000	Weak transcription	Fetal Stomach	stomach
21	chr7:140311200-140321600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:140311200-140323600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr7:140311400-140317000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:140311400-140320400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr7:140311600-140313800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:140311800-140317600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:140312000-140317000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr7:140312200-140321200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:140312400-140313800	Strong transcription	Fetal Muscle Leg	muscle
30	chr7:140312600-140314600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:140312600-140316400	Weak transcription	Placenta	Placenta
32	chr7:140313400-140314000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:140313600-140313800	Enhancers	Fetal Kidney	kidney
34	chr7:140313600-140313800	Enhancers	HSMM	muscle
35	chr7:140313600-140314000	Enhancers	Brain Germinal Matrix	brain
36	chr7:140313600-140314200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:140313600-140314200	Enhancers	Ovary	ovary
38	chr7:140313600-140314600	Enhancers	HSMMtube	muscle

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