Variant report

Variant	rs7809753
Chromosome Location	chr7:121442336-121442337
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12669706	0.84[JPT][hapmap]
rs12671267	0.86[AMR][1000 genomes]
rs1916885	0.84[JPT][hapmap]
rs2052133	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2191783	0.83[JPT][hapmap]
rs3801377	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs3801380	0.82[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs58748383	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs59375388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6971645	0.83[JPT][hapmap]
rs73433083	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73433091	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73717719	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs740965	0.82[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs9641678	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121433800-121442400	Enhancers	HMEC	breast
2	chr7:121436400-121444000	Enhancers	NHEK	skin
3	chr7:121439200-121444000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:121439600-121442800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:121439600-121443800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:121440000-121442600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:121440000-121442800	Weak transcription	Fetal Brain Female	brain
8	chr7:121440200-121443800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:121440600-121450400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:121441600-121442800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:121441600-121443200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:121441600-121443400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:121441800-121443200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:121442200-121442600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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