Variant report

Variant	rs7811663
Chromosome Location	chr7:117986207-117986208
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12216555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12375050	0.82[ASN][1000 genomes]
rs16870238	0.82[ASN][1000 genomes]
rs17141283	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17141346	0.82[ASN][1000 genomes]
rs17141351	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17141357	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17141365	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2402323	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3757799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3757801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3808178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4141027	0.82[JPT][hapmap]
rs4141029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4141030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs62467070	0.82[ASN][1000 genomes]
rs62467071	0.82[ASN][1000 genomes]
rs62467072	0.82[ASN][1000 genomes]
rs62468177	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62468208	0.80[EUR][1000 genomes]
rs62468210	0.86[EUR][1000 genomes]
rs62468211	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62468212	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62468214	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62468215	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62468223	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62468224	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468226	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468227	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62468228	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468229	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62468231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6943182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6953131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6962486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6964536	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6964881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6964892	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968077	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6976656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7778155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7779452	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7785444	1.00[CEU][hapmap]
rs7792264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7792296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7793835	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7796775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7798529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs979653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889090	chr7:117865940-118067460	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1029103	chr7:117917362-118035987	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2764014	chr7:117917374-118035999	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv608262	chr7:117926753-118036133	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv429805	chr7:117940049-118026049	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1804964	chr7:117960973-118188573	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv1803022	chr7:117970170-117998574	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv608263	chr7:117973445-118058927	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv889092	chr7:117977091-118067460	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv889093	chr7:117977091-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv889094	chr7:117981820-118186543	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv966731	chr7:117985186-117987623	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117964400-117986800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:117986000-117987800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr7:117986200-117987200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:117986200-117987200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:117986200-117987800	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links