Variant report

Variant	rs62468210
Chromosome Location	chr7:117938660-117938661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12155479	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17141283	0.88[EUR][1000 genomes]
rs2402323	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41281099	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62466514	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62466525	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62467931	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62468165	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468170	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468171	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468172	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62468173	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468177	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468211	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468212	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468214	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468215	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468223	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62468224	0.88[EUR][1000 genomes]
rs62468226	0.88[EUR][1000 genomes]
rs62468227	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62468228	0.88[EUR][1000 genomes]
rs62468229	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62468231	0.88[EUR][1000 genomes]
rs62468289	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62468292	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468293	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468304	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468307	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468310	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468311	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468315	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62469804	0.82[EUR][1000 genomes]
rs62469805	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62469807	0.82[EUR][1000 genomes]
rs62469813	0.82[EUR][1000 genomes]
rs62469815	0.82[EUR][1000 genomes]
rs6942561	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6945543	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6964536	0.83[EUR][1000 genomes]
rs6964892	0.88[EUR][1000 genomes]
rs6968077	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7785444	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7793835	0.88[EUR][1000 genomes]
rs7795737	0.82[EUR][1000 genomes]
rs7811663	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889090	chr7:117865940-118067460	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv889091	chr7:117899190-117963926	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1029103	chr7:117917362-118035987	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2764014	chr7:117917374-118035999	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv608261	chr7:117917719-117965390	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv608262	chr7:117926753-118036133	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117937400-117940600	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links