Variant report

Variant	rs62468307
Chromosome Location	chr7:117811045-117811046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117810000..117816028-chr7:117818998..117827280,18	MCF-7	breast:
2	chr7:117807631..117809335-chr7:117809993..117811575,2	K562	blood:
3	chr7:117803601..117805176-chr7:117809877..117811629,2	K562	blood:
4	chr7:117809348..117812176-chr7:117812689..117815376,2	K562	blood:
5	chr7:117800817..117802687-chr7:117810955..117814071,3	MCF-7	breast:
6	chr7:117806265..117809335-chr7:117809993..117813249,4	K562	blood:
7	chr7:117712368..117714934-chr7:117809130..117811902,2	K562	blood:

Variant related genes	Relation type
ENSG00000128534	Chromatin interaction

Extended variants
information (count: 154 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs10265770	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12154543	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12155479	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12216555	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1468666	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16870173	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17140937	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17140943	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17141022	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17141033	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1990454	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2191921	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2191922	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2286855	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2286856	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2286857	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2286861	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2286862	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2286864	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3757799	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3757801	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3808172	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3808175	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3808178	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3808179	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3898536	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs41281099	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4141029	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4141030	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466461	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466462	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466463	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466464	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466466	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466467	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466468	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466469	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62466472	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62466473	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466474	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466475	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466476	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466478	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466512	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466513	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466514	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466516	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466517	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466518	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466519	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466520	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466521	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466522	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466523	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466525	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466526	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466527	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466528	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466529	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466531	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466532	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466533	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466554	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62466555	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62466558	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62467931	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62467933	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62468165	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468169	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468170	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468171	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468172	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62468173	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468208	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468210	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468289	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62468290	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62468291	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62468292	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468294	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468298	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468299	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468300	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468301	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468302	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468303	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468305	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468306	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468308	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468309	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468312	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62468313	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62468314	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62468315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469766	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62469768	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62469784	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62469785	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62469787	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62469804	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62469805	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62469807	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62469813	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62469815	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6466651	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6942561	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943182	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6945543	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946385	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6953131	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6955534	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6957412	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6957623	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6962486	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6964881	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6966522	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6966654	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6968077	0.82[EUR][1000 genomes]
rs6971712	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6976656	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6980163	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7778155	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7779197	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7779284	0.82[EUR][1000 genomes]
rs7779452	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7779944	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7780322	0.82[EUR][1000 genomes]
rs7785444	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7792078	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7792264	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7792296	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7792510	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7792843	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7795737	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7796775	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7798307	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7798370	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7798529	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7804943	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7805538	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7805843	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7806876	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7807306	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7809247	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7809742	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7811055	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs979651	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs979653	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117791200-117815800	Weak transcription	Psoas Muscle	Psoas
2	chr7:117810600-117811600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:117810800-117811800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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