Variant report

Variant	rs62468173
Chromosome Location	chr7:117904832-117904833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117898898..117901210-chr7:117904773..117907240,2	K562	blood:
2	chr7:117893799..117896241-chr7:117904650..117906874,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12155479	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2402323	0.83[EUR][1000 genomes]
rs41281099	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62466514	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62466525	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62467931	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62468165	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468170	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468171	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468172	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62468177	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62468208	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468210	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468211	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62468212	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62468214	0.83[EUR][1000 genomes]
rs62468215	0.83[EUR][1000 genomes]
rs62468223	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62468227	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62468229	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62468289	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62468292	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468293	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468304	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468307	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468310	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468311	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468315	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62469804	0.81[EUR][1000 genomes]
rs62469805	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62469807	0.81[EUR][1000 genomes]
rs62469813	0.81[EUR][1000 genomes]
rs62469815	0.81[EUR][1000 genomes]
rs6942561	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6945543	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6968077	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7785444	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7795737	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv889089	chr7:117865940-117921267	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv889090	chr7:117865940-118067460	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv889091	chr7:117899190-117963926	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv966730	chr7:117901893-117906091	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117904200-117905600	Enhancers	Dnd41	blood

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