Variant report

Variant	rs62469804
Chromosome Location	chr7:117769130-117769131
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 162 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:153)

rs_ID	r²[population]
rs10265770	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12154543	0.94[EUR][1000 genomes]
rs12155479	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216555	0.94[EUR][1000 genomes]
rs1468666	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16870173	0.94[EUR][1000 genomes]
rs17140937	0.82[EUR][1000 genomes]
rs17140943	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17141022	0.94[EUR][1000 genomes]
rs17141033	0.94[EUR][1000 genomes]
rs1990454	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2191921	0.94[EUR][1000 genomes]
rs2191922	0.94[EUR][1000 genomes]
rs2286855	0.94[EUR][1000 genomes]
rs2286856	0.88[EUR][1000 genomes]
rs2286857	0.94[EUR][1000 genomes]
rs2286861	0.94[EUR][1000 genomes]
rs2286862	0.94[EUR][1000 genomes]
rs2286864	0.82[EUR][1000 genomes]
rs3757799	0.94[EUR][1000 genomes]
rs3757801	0.94[EUR][1000 genomes]
rs3808172	0.94[EUR][1000 genomes]
rs3808175	0.94[EUR][1000 genomes]
rs3808178	0.94[EUR][1000 genomes]
rs3808179	0.94[EUR][1000 genomes]
rs3898536	0.91[EUR][1000 genomes]
rs41281099	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4141029	0.94[EUR][1000 genomes]
rs4141030	0.94[EUR][1000 genomes]
rs62466461	0.94[EUR][1000 genomes]
rs62466462	0.94[EUR][1000 genomes]
rs62466463	0.94[EUR][1000 genomes]
rs62466464	0.94[EUR][1000 genomes]
rs62466466	0.94[EUR][1000 genomes]
rs62466467	0.94[EUR][1000 genomes]
rs62466468	0.94[EUR][1000 genomes]
rs62466469	0.84[EUR][1000 genomes]
rs62466472	0.88[EUR][1000 genomes]
rs62466473	0.94[EUR][1000 genomes]
rs62466474	0.94[EUR][1000 genomes]
rs62466475	0.94[EUR][1000 genomes]
rs62466476	0.94[EUR][1000 genomes]
rs62466478	0.94[EUR][1000 genomes]
rs62466512	0.94[EUR][1000 genomes]
rs62466513	0.94[EUR][1000 genomes]
rs62466514	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62466516	0.94[EUR][1000 genomes]
rs62466517	0.94[EUR][1000 genomes]
rs62466518	0.94[EUR][1000 genomes]
rs62466519	0.94[EUR][1000 genomes]
rs62466520	0.94[EUR][1000 genomes]
rs62466521	0.94[EUR][1000 genomes]
rs62466522	0.94[EUR][1000 genomes]
rs62466523	0.94[EUR][1000 genomes]
rs62466525	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62466526	0.94[EUR][1000 genomes]
rs62466527	0.94[EUR][1000 genomes]
rs62466528	0.94[EUR][1000 genomes]
rs62466529	0.94[EUR][1000 genomes]
rs62466531	0.94[EUR][1000 genomes]
rs62466532	0.94[EUR][1000 genomes]
rs62466533	0.94[EUR][1000 genomes]
rs62466554	0.97[EUR][1000 genomes]
rs62466555	0.94[EUR][1000 genomes]
rs62466558	0.94[EUR][1000 genomes]
rs62467931	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62467933	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62468165	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62468169	0.94[EUR][1000 genomes]
rs62468170	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62468171	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62468172	1.00[EUR][1000 genomes]
rs62468173	0.81[EUR][1000 genomes]
rs62468208	0.88[EUR][1000 genomes]
rs62468210	0.82[EUR][1000 genomes]
rs62468289	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468290	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62468291	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62468292	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62468293	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62468294	0.94[EUR][1000 genomes]
rs62468298	0.94[EUR][1000 genomes]
rs62468299	0.94[EUR][1000 genomes]
rs62468300	0.94[EUR][1000 genomes]
rs62468301	0.94[EUR][1000 genomes]
rs62468302	0.94[EUR][1000 genomes]
rs62468303	0.94[EUR][1000 genomes]
rs62468304	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62468305	0.94[EUR][1000 genomes]
rs62468306	0.94[EUR][1000 genomes]
rs62468307	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62468308	0.94[EUR][1000 genomes]
rs62468309	0.94[EUR][1000 genomes]
rs62468310	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62468311	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62468312	0.91[EUR][1000 genomes]
rs62468313	0.91[EUR][1000 genomes]
rs62468314	0.94[EUR][1000 genomes]
rs62468315	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62469766	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62469768	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469784	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469785	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469787	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469805	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469807	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469813	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469815	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466651	0.94[EUR][1000 genomes]
rs6942561	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6943182	0.94[EUR][1000 genomes]
rs6945543	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6946385	0.94[EUR][1000 genomes]
rs6953131	0.94[EUR][1000 genomes]
rs6955534	0.94[EUR][1000 genomes]
rs6957412	0.94[EUR][1000 genomes]
rs6957623	0.94[EUR][1000 genomes]
rs6962486	0.94[EUR][1000 genomes]
rs6964881	0.94[EUR][1000 genomes]
rs6966522	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6966654	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6968077	0.82[EUR][1000 genomes]
rs6971712	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6976656	0.94[EUR][1000 genomes]
rs6980163	0.94[EUR][1000 genomes]
rs7778155	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7779197	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7779284	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7779452	0.94[EUR][1000 genomes]
rs7779944	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7780322	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7785444	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7792078	0.94[EUR][1000 genomes]
rs7792264	0.94[EUR][1000 genomes]
rs7792296	0.94[EUR][1000 genomes]
rs7792510	0.94[EUR][1000 genomes]
rs7792843	0.94[EUR][1000 genomes]
rs7795737	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796775	0.94[EUR][1000 genomes]
rs7798307	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7798370	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7798529	0.94[EUR][1000 genomes]
rs7804943	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7805538	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7805843	0.82[EUR][1000 genomes]
rs7806876	0.94[EUR][1000 genomes]
rs7807306	0.94[EUR][1000 genomes]
rs7809247	0.94[EUR][1000 genomes]
rs7809742	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7810156	0.82[AMR][1000 genomes]
rs7811055	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs979651	0.88[EUR][1000 genomes]
rs979653	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv2752146	chr7:117739049-117792049	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1016264	chr7:117739146-117792988	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2761358	chr7:117739158-117793000	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv608260	chr7:117739400-117792838	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1028064	chr7:117740164-117792988	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	esv3428352	chr7:117754050-117783524	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv33380	chr7:117768471-117793477	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117768600-117769400	Enhancers	Primary B cells from peripheral blood	blood
2	chr7:117768600-117769400	Enhancers	Fetal Brain Female	brain
3	chr7:117768600-117769800	Enhancers	Primary hematopoietic stem cells	blood
4	chr7:117768600-117769800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:117768600-117769800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:117768600-117770400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr7:117768800-117773400	Weak transcription	Fetal Brain Male	brain
8	chr7:117769000-117769400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:117769000-117769400	Enhancers	Adipose Nuclei	Adipose

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