Variant report

Variant	rs62468208
Chromosome Location	chr7:117930488-117930489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs10265770	0.82[EUR][1000 genomes]
rs12154543	0.82[EUR][1000 genomes]
rs12155479	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12216555	0.82[EUR][1000 genomes]
rs1468666	0.81[EUR][1000 genomes]
rs16870173	0.82[EUR][1000 genomes]
rs17141022	0.82[EUR][1000 genomes]
rs17141033	0.82[EUR][1000 genomes]
rs17141283	0.82[EUR][1000 genomes]
rs2191921	0.82[EUR][1000 genomes]
rs2191922	0.82[EUR][1000 genomes]
rs2286855	0.82[EUR][1000 genomes]
rs2286857	0.82[EUR][1000 genomes]
rs2286861	0.82[EUR][1000 genomes]
rs2286862	0.82[EUR][1000 genomes]
rs2402323	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3757799	0.82[EUR][1000 genomes]
rs3757801	0.82[EUR][1000 genomes]
rs3808172	0.82[EUR][1000 genomes]
rs3808175	0.82[EUR][1000 genomes]
rs3808178	0.82[EUR][1000 genomes]
rs3808179	0.82[EUR][1000 genomes]
rs3898536	0.80[EUR][1000 genomes]
rs41281099	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4141029	0.82[EUR][1000 genomes]
rs4141030	0.82[EUR][1000 genomes]
rs62466461	0.82[EUR][1000 genomes]
rs62466462	0.82[EUR][1000 genomes]
rs62466463	0.82[EUR][1000 genomes]
rs62466464	0.82[EUR][1000 genomes]
rs62466466	0.82[EUR][1000 genomes]
rs62466467	0.82[EUR][1000 genomes]
rs62466468	0.82[EUR][1000 genomes]
rs62466473	0.82[EUR][1000 genomes]
rs62466474	0.82[EUR][1000 genomes]
rs62466475	0.82[EUR][1000 genomes]
rs62466476	0.82[EUR][1000 genomes]
rs62466478	0.82[EUR][1000 genomes]
rs62466512	0.82[EUR][1000 genomes]
rs62466513	0.82[EUR][1000 genomes]
rs62466514	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62466516	0.82[EUR][1000 genomes]
rs62466517	0.82[EUR][1000 genomes]
rs62466518	0.82[EUR][1000 genomes]
rs62466519	0.82[EUR][1000 genomes]
rs62466520	0.82[EUR][1000 genomes]
rs62466521	0.82[EUR][1000 genomes]
rs62466522	0.82[EUR][1000 genomes]
rs62466523	0.82[EUR][1000 genomes]
rs62466525	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62466526	0.82[EUR][1000 genomes]
rs62466527	0.82[EUR][1000 genomes]
rs62466528	0.82[EUR][1000 genomes]
rs62466529	0.82[EUR][1000 genomes]
rs62466531	0.82[EUR][1000 genomes]
rs62466532	0.82[EUR][1000 genomes]
rs62466533	0.82[EUR][1000 genomes]
rs62466554	0.85[EUR][1000 genomes]
rs62466555	0.82[EUR][1000 genomes]
rs62466558	0.82[EUR][1000 genomes]
rs62467931	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62468165	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468169	0.82[EUR][1000 genomes]
rs62468170	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468171	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468172	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62468173	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468177	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62468210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468211	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62468212	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62468214	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62468215	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62468223	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62468224	0.82[EUR][1000 genomes]
rs62468226	0.82[EUR][1000 genomes]
rs62468227	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62468228	0.82[EUR][1000 genomes]
rs62468229	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62468231	0.82[EUR][1000 genomes]
rs62468289	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62468292	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468293	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468294	0.82[EUR][1000 genomes]
rs62468298	0.82[EUR][1000 genomes]
rs62468299	0.82[EUR][1000 genomes]
rs62468300	0.82[EUR][1000 genomes]
rs62468301	0.82[EUR][1000 genomes]
rs62468302	0.82[EUR][1000 genomes]
rs62468303	0.82[EUR][1000 genomes]
rs62468304	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468305	0.82[EUR][1000 genomes]
rs62468306	0.82[EUR][1000 genomes]
rs62468307	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468308	0.82[EUR][1000 genomes]
rs62468309	0.82[EUR][1000 genomes]
rs62468310	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468311	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468314	0.82[EUR][1000 genomes]
rs62468315	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62469766	0.85[EUR][1000 genomes]
rs62469768	0.85[EUR][1000 genomes]
rs62469784	0.85[EUR][1000 genomes]
rs62469785	0.85[EUR][1000 genomes]
rs62469787	0.85[EUR][1000 genomes]
rs62469804	0.88[EUR][1000 genomes]
rs62469805	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62469807	0.88[EUR][1000 genomes]
rs62469813	0.88[EUR][1000 genomes]
rs62469815	0.88[EUR][1000 genomes]
rs6466651	0.82[EUR][1000 genomes]
rs6942561	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6943182	0.82[EUR][1000 genomes]
rs6945543	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6946385	0.82[EUR][1000 genomes]
rs6953131	0.82[EUR][1000 genomes]
rs6955534	0.82[EUR][1000 genomes]
rs6957412	0.82[EUR][1000 genomes]
rs6957623	0.82[EUR][1000 genomes]
rs6962486	0.82[EUR][1000 genomes]
rs6964881	0.82[EUR][1000 genomes]
rs6964892	0.82[EUR][1000 genomes]
rs6966654	0.85[EUR][1000 genomes]
rs6968077	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6976656	0.82[EUR][1000 genomes]
rs6980163	0.82[EUR][1000 genomes]
rs7778155	0.82[EUR][1000 genomes]
rs7779452	0.82[EUR][1000 genomes]
rs7785444	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7792078	0.82[EUR][1000 genomes]
rs7792264	0.82[EUR][1000 genomes]
rs7792296	0.82[EUR][1000 genomes]
rs7792510	0.82[EUR][1000 genomes]
rs7792843	0.82[EUR][1000 genomes]
rs7793835	0.82[EUR][1000 genomes]
rs7795737	0.88[EUR][1000 genomes]
rs7796775	0.82[EUR][1000 genomes]
rs7798529	0.82[EUR][1000 genomes]
rs7806876	0.82[EUR][1000 genomes]
rs7807306	0.82[EUR][1000 genomes]
rs7809247	0.82[EUR][1000 genomes]
rs7811663	0.80[EUR][1000 genomes]
rs979653	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889090	chr7:117865940-118067460	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv889091	chr7:117899190-117963926	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1029103	chr7:117917362-118035987	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2764014	chr7:117917374-118035999	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv608261	chr7:117917719-117965390	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv608262	chr7:117926753-118036133	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117927400-117931400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
2	chr7:117930200-117932000	ZNF genes & repeats	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links