Variant report

Variant	rs7812810
Chromosome Location	chr8:107604587-107604588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107603658..107609458-chr8:107669183..107672502,7	MCF-7	breast:
2	chr8:106920159..106921437-chr8:107603839..107604727,4	MCF-7	breast:
3	chr8:106917185..106917788-chr8:107603831..107604640,2	MCF-7	breast:
4	chr8:107532601..107533546-chr8:107603982..107604668,2	MCF-7	breast:
5	chr8:106793672..106794194-chr8:107604034..107604594,2	MCF-7	breast:
6	chr8:107603766..107606561-chr8:107668197..107669821,2	MCF-7	breast:
7	chr8:106918479..106919292-chr8:107603720..107604631,2	MCF-7	breast:
8	chr8:106945057..106945974-chr8:107604226..107604770,2	MCF-7	breast:
9	chr8:107589621..107590429-chr8:107603675..107604668,5	MCF-7	breast:
10	chr8:107016322..107017410-chr8:107603753..107604682,5	MCF-7	breast:
11	chr8:106917815..106919520-chr8:107603747..107605061,5	MCF-7	breast:
12	chr8:106951745..106953008-chr8:107603708..107604641,6	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10092734	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10481106	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955426	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277536	0.84[AMR][1000 genomes]
rs13277953	0.84[AMR][1000 genomes]
rs13281794	0.87[ASN][1000 genomes]
rs7825288	0.84[AMR][1000 genomes]
rs7845941	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107592400-107606600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:107601600-107606800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:107601600-107610200	Weak transcription	Stomach Mucosa	stomach
5	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:107601800-107606600	Weak transcription	Fetal Intestine Small	intestine
7	chr8:107602200-107606000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr8:107603800-107605000	Enhancers	Primary B cells from peripheral blood	blood
9	chr8:107603800-107605000	Enhancers	GM12878-XiMat	blood
10	chr8:107604000-107605400	Enhancers	Primary hematopoietic stem cells	blood
11	chr8:107604200-107605000	Weak transcription	HepG2	liver
12	chr8:107604200-107605200	Enhancers	Primary B cells from cord blood	blood
13	chr8:107604200-107606200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:107604400-107605200	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr8:107604400-107606600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr8:107604400-107606600	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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