Variant report

Variant	rs10092734
Chromosome Location	chr8:107606729-107606730
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107603658..107609458-chr8:107669183..107672502,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction
ENSG00000253582	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10109609	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs10481106	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10955426	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12678817	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13272695	0.82[ASN][1000 genomes]
rs13273300	0.82[ASN][1000 genomes]
rs13277536	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13277953	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13281794	0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs7812810	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7825288	0.87[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes]
rs7836690	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7845941	0.87[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9297384	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10092734	DAB2IP	cis	Frontal Cortex	GTEx
rs10092734	UNG	cis	Frontal Cortex	GTEx

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107601600-107606800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:107601600-107610200	Weak transcription	Stomach Mucosa	stomach
4	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:107605000-107607800	Weak transcription	GM12878-XiMat	blood
6	chr8:107605000-107609200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr8:107605200-107609200	Weak transcription	Primary B cells from cord blood	blood
8	chr8:107605200-107609600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:107605400-107609600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr8:107605400-107609800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:107605600-107609200	Weak transcription	Fetal Thymus	thymus
12	chr8:107606000-107606800	Enhancers	Stomach Smooth Muscle	stomach
13	chr8:107606000-107607400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:107606000-107607600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr8:107606000-107607600	Enhancers	Fetal Heart	heart
16	chr8:107606200-107607000	Enhancers	Colon Smooth Muscle	Colon
17	chr8:107606200-107607600	Enhancers	Rectal Smooth Muscle	rectum
18	chr8:107606200-107609400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:107606400-107607000	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr8:107606600-107606800	Enhancers	Fetal Intestine Small	intestine
21	chr8:107606600-107606800	Enhancers	Fetal Kidney	kidney
22	chr8:107606600-107607200	Enhancers	Brain Cingulate Gyrus	brain
23	chr8:107606600-107607200	Enhancers	Fetal Stomach	stomach
24	chr8:107606600-107607200	Enhancers	NH-A	brain
25	chr8:107606600-107607400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:107606600-107607400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:107606600-107607400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr8:107606600-107607600	Enhancers	Cortex derived primary cultured neurospheres	brain

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