Variant report

Variant	rs12678817
Chromosome Location	chr8:107613929-107613930
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107612963..107615738-chr8:107617807..107620610,3	MCF-7	breast:
2	chr8:107612473..107614720-chr8:107621248..107623288,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10089338	0.85[ASN][1000 genomes]
rs10092734	0.87[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];0.86[LWK][hapmap];0.86[MEX][hapmap];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10096751	0.83[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs10102200	0.85[ASN][1000 genomes]
rs10106834	0.82[GIH][hapmap]
rs10112678	0.82[CHB][hapmap];0.85[ASN][1000 genomes]
rs10283130	0.82[GIH][hapmap]
rs10481106	0.80[AMR][1000 genomes]
rs10505094	0.83[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs10505095	0.83[CHB][hapmap]
rs10955426	0.80[AMR][1000 genomes]
rs11989387	0.83[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs12114857	0.85[ASN][1000 genomes]
rs12542218	0.85[ASN][1000 genomes]
rs12543558	0.82[GIH][hapmap]
rs13257540	0.80[ASN][1000 genomes]
rs13259080	0.82[GIH][hapmap]
rs13277536	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277953	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564117	0.83[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs16875066	0.82[GIH][hapmap]
rs1872282	0.82[GIH][hapmap]
rs1968806	0.82[ASN][1000 genomes]
rs1968807	0.82[ASN][1000 genomes]
rs28515157	0.89[ASN][1000 genomes]
rs34566529	0.85[ASN][1000 genomes]
rs35480722	0.85[ASN][1000 genomes]
rs35638470	0.85[ASN][1000 genomes]
rs56746010	0.89[ASN][1000 genomes]
rs7008064	0.85[ASN][1000 genomes]
rs7462454	0.82[ASN][1000 genomes]
rs7825288	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7836690	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7845941	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297384	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:107607400-107616400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:107607400-107617000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:107607600-107616800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:107607600-107618200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:107610800-107616400	Weak transcription	HUVEC	blood vessel
8	chr8:107610800-107619200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:107611000-107617000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:107611600-107616600	Weak transcription	Stomach Mucosa	stomach
11	chr8:107611600-107619400	Weak transcription	Fetal Thymus	thymus
12	chr8:107612400-107614200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:107612800-107618800	Weak transcription	Gastric	stomach
14	chr8:107613200-107616600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr8:107613800-107615400	Enhancers	Colon Smooth Muscle	Colon

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