Variant report

Variant	rs34566529
Chromosome Location	chr8:107617913-107617914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107616460..107618563-chr8:107620891..107623162,2	MCF-7	breast:
2	chr8:107617562..107623335-chr8:107668202..107671640,8	MCF-7	breast:
3	chr8:107612963..107615738-chr8:107617807..107620610,3	MCF-7	breast:
4	chr8:107616759..107623874-chr8:107668754..107672668,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction
ENSG00000253582	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10089338	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10096751	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10102200	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10112678	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10505094	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10505095	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11989387	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11994815	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11994941	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12114857	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12542218	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12678817	0.85[ASN][1000 genomes]
rs13257540	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13272695	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13273300	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13277536	0.85[ASN][1000 genomes]
rs13277953	0.85[ASN][1000 genomes]
rs1564117	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1968806	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1968807	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28515157	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35480722	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35638470	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56746010	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7008064	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7462454	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7825288	0.84[ASN][1000 genomes]
rs7836690	0.85[ASN][1000 genomes]
rs7845941	0.85[ASN][1000 genomes]
rs9297384	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:107607600-107618200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:107610800-107619200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:107611600-107619400	Weak transcription	Fetal Thymus	thymus
6	chr8:107612800-107618800	Weak transcription	Gastric	stomach
7	chr8:107614400-107618400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:107616000-107620800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr8:107616800-107620200	Weak transcription	Fetal Intestine Large	intestine
10	chr8:107616800-107624200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr8:107617000-107623400	Weak transcription	Right Atrium	heart
12	chr8:107617200-107618800	Weak transcription	NHEK	skin
13	chr8:107617200-107619000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr8:107617200-107619400	Weak transcription	Fetal Kidney	kidney
15	chr8:107617200-107623600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr8:107617200-107641000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:107617400-107618600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:107617400-107619000	Weak transcription	Colon Smooth Muscle	Colon
19	chr8:107617400-107619200	Weak transcription	Fetal Stomach	stomach
20	chr8:107617600-107618000	Weak transcription	Stomach Mucosa	stomach
21	chr8:107617600-107618800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:107617800-107619600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:107617800-107619800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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