Variant report

Variant	rs11989387
Chromosome Location	chr8:107636130-107636131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:65293521..65294041-chr8:107636082..107636585,2	MCF-7	breast:
2	chr8:107611388..107611889-chr8:107636028..107636989,2	MCF-7	breast:
3	chr8:107618803..107621024-chr8:107635376..107637603,2	MCF-7	breast:
4	chr8:97372025..97372580-chr8:107636021..107636556,2	MCF-7	breast:
5	chr8:107620227..107620997-chr8:107635963..107636467,2	MCF-7	breast:
6	chr8:107635982..107636832-chr8:107655490..107656098,4	MCF-7	breast:
7	chr8:107621102..107628249-chr8:107632909..107636528,6	MCF-7	breast:
8	chr8:107635047..107638167-chr8:107668813..107672580,5	MCF-7	breast:
9	chr8:107057702..107058412-chr8:107636030..107636553,2	MCF-7	breast:
10	chr8:107611388..107611937-chr8:107635988..107636989,3	MCF-7	breast:
11	chr8:98776354..98777057-chr8:107636084..107636951,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253582	Chromatin interaction
ENSG00000164830	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10088694	0.85[CEU][hapmap];0.87[GIH][hapmap];0.83[TSI][hapmap]
rs10089338	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096751	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100453	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10102200	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10106834	0.83[TSI][hapmap]
rs10109609	0.87[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10112678	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505094	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505095	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11994815	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11994941	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12114857	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12542218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678817	0.85[ASN][1000 genomes]
rs13257540	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13272695	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13273300	0.82[ASN][1000 genomes]
rs13277536	0.85[ASN][1000 genomes]
rs13277953	0.85[ASN][1000 genomes]
rs13281794	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs1564117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16875066	0.83[TSI][hapmap]
rs1872282	0.83[TSI][hapmap]
rs1968804	0.80[ASN][1000 genomes]
rs1968806	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1968807	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28515157	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34566529	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35480722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35638470	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56746010	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7008064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7462454	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7825288	0.81[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs7836690	0.85[ASN][1000 genomes]
rs7845941	0.88[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs9297384	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107617200-107641000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:107620400-107653400	Weak transcription	Aorta	Aorta
4	chr8:107630600-107643400	Weak transcription	Gastric	stomach
5	chr8:107630600-107657200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:107631000-107636200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr8:107634200-107636200	Enhancers	HepG2	liver
8	chr8:107634200-107636600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:107635200-107636400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:107635400-107636800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr8:107635600-107638000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr8:107635800-107636400	Enhancers	Liver	Liver
13	chr8:107635800-107636800	Enhancers	Fetal Kidney	kidney
14	chr8:107636000-107638000	Enhancers	Stomach Mucosa	stomach

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