Variant report

Variant	rs13281794
Chromosome Location	chr8:107592813-107592814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10092734	0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs10096751	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs10100453	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10109609	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10112678	0.82[CHB][hapmap]
rs10481106	0.87[ASN][1000 genomes]
rs10505094	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs10505095	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs10955426	0.87[ASN][1000 genomes]
rs11989387	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs13272695	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13273300	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1564117	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs7812810	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107590000-107593600	Enhancers	Fetal Intestine Small	intestine
3	chr8:107590000-107593800	Enhancers	Fetal Intestine Large	intestine
4	chr8:107590200-107601400	Weak transcription	Pancreas	Pancrea
5	chr8:107591000-107593000	Enhancers	Fetal Kidney	kidney
6	chr8:107591800-107594000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:107592400-107593000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:107592400-107606600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:107592800-107593600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr8:107592800-107593600	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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