Variant report

Variant	rs10481106
Chromosome Location	chr8:107599471-107599472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10092734	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10109609	0.85[CHD][hapmap]
rs10955426	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678817	0.80[AMR][1000 genomes]
rs13277536	0.85[AMR][1000 genomes]
rs13277953	0.85[AMR][1000 genomes]
rs13281794	0.82[CEU][hapmap];0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs7812810	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825288	0.83[CHB][hapmap];0.80[JPT][hapmap];0.85[AMR][1000 genomes]
rs7845941	0.83[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes]
rs9297384	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10481106	TM7SF4	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107590200-107601400	Weak transcription	Pancreas	Pancrea
3	chr8:107592400-107606600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:107594200-107601200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:107594800-107600600	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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