Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107591263..107592777-chr8:107615889..107617412,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10089338	0.82[ASN][1000 genomes]
rs10092734	0.82[ASN][1000 genomes]
rs10096751	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10100453	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10102200	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10109609	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10112678	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10505094	0.82[ASN][1000 genomes]
rs11989387	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12114857	0.82[ASN][1000 genomes]
rs12542218	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13273300	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13281794	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1564117	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1968804	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28515157	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34566529	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35480722	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35638470	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56746010	0.87[ASN][1000 genomes]
rs7008064	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:107607400-107616400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:107607400-107617000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:107607600-107616800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:107607600-107618200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:107610800-107616400	Weak transcription	HUVEC	blood vessel
8	chr8:107610800-107619200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:107611000-107617000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:107611600-107616600	Weak transcription	Stomach Mucosa	stomach
11	chr8:107611600-107619400	Weak transcription	Fetal Thymus	thymus
12	chr8:107612800-107618800	Weak transcription	Gastric	stomach
13	chr8:107613200-107616600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr8:107614400-107618400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:107614800-107616800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:107615400-107616800	Weak transcription	Colon Smooth Muscle	Colon
17	chr8:107616000-107620800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search: