Variant report

Variant	rs10088694
Chromosome Location	chr8:107785488-107785489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107780431..107782315-chr8:107783713..107785641,2	K562	blood:
2	chr8:107784254..107786667-chr8:107794076..107796318,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10086709	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs10087077	0.85[EUR][1000 genomes]
rs10089357	0.82[EUR][1000 genomes]
rs10089890	0.85[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs10090534	0.85[CHB][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10091390	0.82[EUR][1000 genomes]
rs10091611	0.85[EUR][1000 genomes]
rs10092665	0.85[EUR][1000 genomes]
rs10096751	0.85[CEU][hapmap];0.87[GIH][hapmap];0.83[TSI][hapmap]
rs10099361	0.83[EUR][1000 genomes]
rs10100839	0.83[EUR][1000 genomes]
rs10101102	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10102112	0.83[EUR][1000 genomes]
rs10104941	0.82[EUR][1000 genomes]
rs10106834	0.85[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10108240	0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs10109609	1.00[CEU][hapmap];0.93[GIH][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap]
rs10110610	0.82[EUR][1000 genomes]
rs10112678	0.85[CEU][hapmap]
rs10283128	0.85[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10283130	0.84[CHD][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs10505094	0.85[CEU][hapmap];0.87[GIH][hapmap];0.83[TSI][hapmap]
rs11989387	0.85[CEU][hapmap];0.87[GIH][hapmap];0.83[TSI][hapmap]
rs12543558	0.81[CHD][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs12544138	0.85[EUR][1000 genomes]
rs12547372	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12547608	0.82[EUR][1000 genomes]
rs12548149	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13254031	0.85[EUR][1000 genomes]
rs13255878	0.85[EUR][1000 genomes]
rs13259080	0.87[CHD][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs13268490	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1564117	0.85[CEU][hapmap];0.87[GIH][hapmap];0.83[TSI][hapmap]
rs16875002	0.85[EUR][1000 genomes]
rs16875065	0.84[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16875066	0.85[CHB][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1872282	0.85[CHB][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2035515	0.82[EUR][1000 genomes]
rs2126580	0.80[EUR][1000 genomes]
rs28422868	0.82[EUR][1000 genomes]
rs28808577	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28921395	0.85[EUR][1000 genomes]
rs35108468	0.82[EUR][1000 genomes]
rs35499727	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36011510	0.85[EUR][1000 genomes]
rs3736179	0.82[EUR][1000 genomes]
rs3779996	0.85[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59316573	0.82[EUR][1000 genomes]
rs7461484	0.82[EUR][1000 genomes]
rs9297385	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1032991	chr8:107756661-107819035	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611846	chr8:107778324-107819368	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107783200-107785800	Enhancers	Fetal Heart	heart
2	chr8:107783200-107798400	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:107784800-107785800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:107784800-107785800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:107785000-107785600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:107785000-107785600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr8:107785000-107785800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:107785000-107785800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:107785000-107785800	Enhancers	Brain Anterior Caudate	brain
10	chr8:107785000-107785800	Enhancers	Brain Substantia Nigra	brain
11	chr8:107785200-107785600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:107785200-107785600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:107785200-107785800	Enhancers	HUVEC	blood vessel
14	chr8:107785400-107785600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr8:107785400-107785600	Enhancers	NHLF	lung
16	chr8:107785400-107785800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:107785400-107785800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr8:107785400-107785800	Enhancers	NHEK	skin
19	chr8:107785400-107786200	Enhancers	Fetal Brain Male	brain
20	chr8:107785400-107789800	Weak transcription	Psoas Muscle	Psoas
21	chr8:107785400-107790000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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