Variant report

Variant	rs7836690
Chromosome Location	chr8:107609216-107609217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107603658..107609458-chr8:107669183..107672502,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction
ENSG00000253582	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10089338	0.85[ASN][1000 genomes]
rs10092734	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10096751	0.85[ASN][1000 genomes]
rs10102200	0.85[ASN][1000 genomes]
rs10112678	0.85[ASN][1000 genomes]
rs10505094	0.85[ASN][1000 genomes]
rs11989387	0.85[ASN][1000 genomes]
rs12114857	0.85[ASN][1000 genomes]
rs12542218	0.85[ASN][1000 genomes]
rs12678817	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257540	0.80[ASN][1000 genomes]
rs13277536	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277953	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564117	0.89[ASN][1000 genomes]
rs1968806	0.82[ASN][1000 genomes]
rs1968807	0.82[ASN][1000 genomes]
rs28515157	0.89[ASN][1000 genomes]
rs34566529	0.85[ASN][1000 genomes]
rs35480722	0.85[ASN][1000 genomes]
rs35638470	0.85[ASN][1000 genomes]
rs56746010	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7008064	0.85[ASN][1000 genomes]
rs7462454	0.82[ASN][1000 genomes]
rs7825288	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7845941	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297384	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107601600-107610200	Weak transcription	Stomach Mucosa	stomach
3	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:107605200-107609600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr8:107605400-107609600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr8:107605400-107609800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:107606200-107609400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:107607400-107610000	Weak transcription	Brain Angular Gyrus	brain
9	chr8:107607400-107610200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:107607400-107616400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:107607400-107617000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:107607600-107610000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:107607600-107610000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr8:107607600-107610000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr8:107607600-107613800	Weak transcription	Colon Smooth Muscle	Colon
16	chr8:107607600-107616800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr8:107607600-107618200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr8:107608200-107609400	Weak transcription	GM12878-XiMat	blood
19	chr8:107608400-107611600	Enhancers	Thymus	Thymus
20	chr8:107609200-107611400	Enhancers	Primary B cells from cord blood	blood
21	chr8:107609200-107611600	Enhancers	Primary B cells from peripheral blood	blood
22	chr8:107609200-107611600	Enhancers	Fetal Thymus	thymus

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