Variant report

Variant	rs7825464
Chromosome Location	chr8:9435628-9435629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10090277	0.82[ASN][1000 genomes]
rs10093972	0.83[ASN][1000 genomes]
rs28499425	0.81[ASN][1000 genomes]
rs57000316	0.82[ASN][1000 genomes]
rs57482128	0.85[AFR][1000 genomes]
rs57987233	0.88[AFR][1000 genomes]
rs6984737	0.97[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7000182	0.82[ASN][1000 genomes]
rs7002917	0.93[ASN][1000 genomes]
rs7013369	0.83[AFR][1000 genomes]
rs7016632	0.88[ASN][1000 genomes]
rs7018268	0.82[ASN][1000 genomes]
rs7018348	0.91[ASN][1000 genomes]
rs73535828	0.86[ASN][1000 genomes]
rs7818016	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7821007	0.85[AFR][1000 genomes]
rs7829677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7837344	0.85[AFR][1000 genomes]
rs7837923	0.89[ASN][1000 genomes]
rs7840161	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9414400-9459600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:9417200-9450000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr8:9417600-9437600	Weak transcription	Dnd41	blood
4	chr8:9422200-9438400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr8:9424800-9440000	Weak transcription	Fetal Lung	lung
6	chr8:9427400-9450000	Weak transcription	Thymus	Thymus
7	chr8:9428200-9466200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:9428400-9450000	Weak transcription	Psoas Muscle	Psoas
9	chr8:9429000-9437200	Weak transcription	Brain Angular Gyrus	brain
10	chr8:9429000-9450000	Weak transcription	Fetal Kidney	kidney
11	chr8:9429200-9437800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr8:9430200-9442400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:9430200-9449800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:9430600-9440400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr8:9431000-9440000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr8:9431000-9447000	Weak transcription	Brain Substantia Nigra	brain
17	chr8:9431000-9448800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr8:9431000-9449400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr8:9431000-9450000	Weak transcription	Colon Smooth Muscle	Colon
20	chr8:9431800-9437400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr8:9432000-9444400	Weak transcription	NHEK	skin
22	chr8:9432000-9448200	Weak transcription	Fetal Brain Male	brain
23	chr8:9432400-9438200	Weak transcription	Osteobl	bone
24	chr8:9432600-9438000	Weak transcription	HMEC	breast
25	chr8:9432600-9438200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr8:9432600-9438400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:9433200-9435800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr8:9433600-9435800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr8:9433600-9437200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr8:9433600-9461000	Weak transcription	Fetal Stomach	stomach
31	chr8:9434200-9436000	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr8:9434400-9435800	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr8:9434600-9435800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr8:9434600-9435800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr8:9434600-9435800	Enhancers	Brain Anterior Caudate	brain
36	chr8:9434600-9435800	Enhancers	HepG2	liver
37	chr8:9434600-9436000	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr8:9434800-9435800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr8:9434800-9435800	Enhancers	Primary T cells fromperipheralblood	blood
40	chr8:9434800-9436400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:9434800-9439000	Weak transcription	GM12878-XiMat	blood
42	chr8:9434800-9459000	Weak transcription	Primary B cells from cord blood	blood
43	chr8:9435000-9435800	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr8:9435000-9435800	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr8:9435000-9435800	Enhancers	Lung	lung
46	chr8:9435000-9435800	Enhancers	Right Atrium	heart
47	chr8:9435000-9435800	Enhancers	Right Ventricle	heart
48	chr8:9435000-9435800	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr8:9435000-9435800	Enhancers	Spleen	Spleen
50	chr8:9435000-9436000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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