Variant report

Variant	rs57482128
Chromosome Location	chr8:9504409-9504410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10086535	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10090277	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10090998	0.90[EUR][1000 genomes]
rs10090999	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10093972	0.84[EUR][1000 genomes]
rs10105767	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10105968	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11249940	0.96[EUR][1000 genomes]
rs11249944	0.89[EUR][1000 genomes]
rs11984920	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11988208	0.91[EUR][1000 genomes]
rs11991831	0.89[EUR][1000 genomes]
rs11995167	0.91[EUR][1000 genomes]
rs12056794	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12234900	0.91[EUR][1000 genomes]
rs12234999	0.91[EUR][1000 genomes]
rs12235001	0.91[EUR][1000 genomes]
rs28495967	0.84[EUR][1000 genomes]
rs28499425	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28562614	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28675389	0.91[EUR][1000 genomes]
rs3209608	0.85[EUR][1000 genomes]
rs33944167	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34614689	0.91[EUR][1000 genomes]
rs35052906	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35420737	0.87[EUR][1000 genomes]
rs35721526	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36036709	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4319098	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4348499	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4380943	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4383973	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4474027	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4529464	0.82[EUR][1000 genomes]
rs4612344	0.86[EUR][1000 genomes]
rs4629869	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5002814	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5002815	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5018578	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55924085	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57000316	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57024674	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57331392	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57580633	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57987233	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58458097	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58596872	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59201801	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59268701	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59519630	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59940446	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60051555	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60078276	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60222666	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60801852	0.89[EUR][1000 genomes]
rs60857446	0.93[EUR][1000 genomes]
rs60942347	0.98[EUR][1000 genomes]
rs61594550	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61682841	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6422356	0.96[EUR][1000 genomes]
rs6601358	0.98[EUR][1000 genomes]
rs6981763	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6984737	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6985140	0.86[EUR][1000 genomes]
rs6986755	0.89[EUR][1000 genomes]
rs6987259	0.91[EUR][1000 genomes]
rs6987746	0.92[EUR][1000 genomes]
rs6990116	0.94[EUR][1000 genomes]
rs6994452	0.93[EUR][1000 genomes]
rs6995292	0.93[EUR][1000 genomes]
rs7000182	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7001395	0.98[EUR][1000 genomes]
rs7002917	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7009596	0.96[EUR][1000 genomes]
rs7009863	0.82[AMR][1000 genomes]
rs7010154	0.83[EUR][1000 genomes]
rs7013369	0.85[EUR][1000 genomes]
rs7014218	0.98[EUR][1000 genomes]
rs7016632	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7018268	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7018348	0.84[EUR][1000 genomes]
rs73523222	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73523224	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73523249	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73535828	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73537955	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73537959	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73537971	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73539904	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73539907	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73662516	0.86[EUR][1000 genomes]
rs7813518	0.93[EUR][1000 genomes]
rs7815297	0.98[EUR][1000 genomes]
rs7815378	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7815506	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7815644	0.86[EUR][1000 genomes]
rs7818016	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7821007	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7825464	0.85[AFR][1000 genomes]
rs7827395	0.91[EUR][1000 genomes]
rs7829677	0.85[AFR][1000 genomes]
rs7837344	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7837923	0.84[EUR][1000 genomes]
rs7840161	0.90[EUR][1000 genomes]
rs7846023	0.96[EUR][1000 genomes]
rs9644705	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9644706	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9474200-9509000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:9481000-9510800	Weak transcription	Primary B cells from cord blood	blood
3	chr8:9481200-9508400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:9484800-9504600	Weak transcription	Primary T cells from cord blood	blood
5	chr8:9485600-9510400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:9485600-9510400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:9485800-9508000	Weak transcription	Fetal Brain Female	brain
8	chr8:9487400-9509000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:9487800-9508400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:9491400-9507800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr8:9491400-9509000	Weak transcription	HSMM	muscle
12	chr8:9492200-9508000	Weak transcription	NH-A	brain
13	chr8:9492400-9507800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:9493600-9509000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr8:9494400-9510400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr8:9494600-9510600	Weak transcription	Fetal Kidney	kidney
17	chr8:9495800-9531000	Weak transcription	Gastric	stomach
18	chr8:9498400-9505200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr8:9499800-9505000	Weak transcription	NHEK	skin
20	chr8:9499800-9510400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:9499800-9512400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr8:9500200-9508000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:9500400-9510600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr8:9501200-9511200	Weak transcription	Right Atrium	heart
25	chr8:9501600-9511000	Weak transcription	Ovary	ovary
26	chr8:9501600-9511400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr8:9501600-9525400	Weak transcription	Thymus	Thymus
28	chr8:9501800-9510400	Weak transcription	Left Ventricle	heart
29	chr8:9501800-9528400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr8:9501800-9534400	Weak transcription	Fetal Heart	heart
31	chr8:9502800-9511000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr8:9503000-9504600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr8:9503000-9521200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr8:9503600-9504600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr8:9503600-9507800	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr8:9503800-9505000	Enhancers	HepG2	liver
37	chr8:9504000-9506200	Enhancers	Brain Anterior Caudate	brain
38	chr8:9504000-9506200	Enhancers	Brain Substantia Nigra	brain
39	chr8:9504200-9505600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr8:9504200-9505600	Enhancers	Brain Cingulate Gyrus	brain
41	chr8:9504200-9509000	Weak transcription	GM12878-XiMat	blood
42	chr8:9504200-9529400	Weak transcription	Colon Smooth Muscle	Colon
43	chr8:9504400-9505200	Enhancers	Brain Hippocampus Middle	brain
44	chr8:9504400-9505200	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr8:9504400-9512200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links