Variant report

Variant	rs60857446
Chromosome Location	chr8:9606192-9606193
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9606177..9606904-chr8:9688214..9688998,2	MCF-7	breast:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10086535	0.84[EUR][1000 genomes]
rs10090277	0.82[EUR][1000 genomes]
rs10090998	0.88[EUR][1000 genomes]
rs10090999	0.88[EUR][1000 genomes]
rs10093972	0.82[EUR][1000 genomes]
rs10105767	0.86[EUR][1000 genomes]
rs10105968	0.84[EUR][1000 genomes]
rs11249940	0.93[EUR][1000 genomes]
rs11249944	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11785739	0.82[EUR][1000 genomes]
rs11984920	0.84[EUR][1000 genomes]
rs11988208	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11991831	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11995167	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12056794	0.86[EUR][1000 genomes]
rs12234900	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12234999	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12235001	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28495967	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28499425	0.86[EUR][1000 genomes]
rs28562614	0.88[EUR][1000 genomes]
rs28675389	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3209608	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs33944167	0.96[EUR][1000 genomes]
rs34614689	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35052906	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35420737	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35721526	0.86[EUR][1000 genomes]
rs36036709	0.86[EUR][1000 genomes]
rs4319098	0.81[EUR][1000 genomes]
rs4348499	0.82[EUR][1000 genomes]
rs4380943	0.81[EUR][1000 genomes]
rs4383973	0.88[EUR][1000 genomes]
rs4474027	0.86[EUR][1000 genomes]
rs4612344	0.84[EUR][1000 genomes]
rs4629869	0.86[EUR][1000 genomes]
rs4841215	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5002814	0.84[EUR][1000 genomes]
rs5002815	0.84[EUR][1000 genomes]
rs5018578	0.84[EUR][1000 genomes]
rs55924085	0.88[EUR][1000 genomes]
rs57000316	0.83[EUR][1000 genomes]
rs57024674	0.84[EUR][1000 genomes]
rs57331392	0.84[EUR][1000 genomes]
rs57482128	0.93[EUR][1000 genomes]
rs57580633	0.86[EUR][1000 genomes]
rs57987233	0.93[EUR][1000 genomes]
rs58458097	0.88[EUR][1000 genomes]
rs58596872	0.93[EUR][1000 genomes]
rs59201801	0.86[EUR][1000 genomes]
rs59268701	0.88[EUR][1000 genomes]
rs59519630	0.84[EUR][1000 genomes]
rs59940446	0.84[EUR][1000 genomes]
rs60051555	0.88[EUR][1000 genomes]
rs60078276	0.86[EUR][1000 genomes]
rs60222666	0.93[EUR][1000 genomes]
rs60801852	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60942347	0.96[EUR][1000 genomes]
rs61594550	0.88[EUR][1000 genomes]
rs61682841	0.86[EUR][1000 genomes]
rs6422356	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6601358	0.96[EUR][1000 genomes]
rs6601362	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6981763	0.84[EUR][1000 genomes]
rs6984737	0.83[EUR][1000 genomes]
rs6985140	0.84[EUR][1000 genomes]
rs6986755	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6987259	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6987746	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6990116	0.91[EUR][1000 genomes]
rs6994452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6995292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6999382	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7000182	0.82[EUR][1000 genomes]
rs7001395	0.96[EUR][1000 genomes]
rs7002917	0.83[EUR][1000 genomes]
rs7009596	0.93[EUR][1000 genomes]
rs7010154	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7014218	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7016632	0.83[EUR][1000 genomes]
rs7018268	0.83[EUR][1000 genomes]
rs7018348	0.82[EUR][1000 genomes]
rs73523222	0.82[EUR][1000 genomes]
rs73523224	0.86[EUR][1000 genomes]
rs73523249	0.88[EUR][1000 genomes]
rs73535828	0.82[EUR][1000 genomes]
rs73537955	0.84[EUR][1000 genomes]
rs73537959	0.82[EUR][1000 genomes]
rs73537971	0.84[EUR][1000 genomes]
rs73539904	0.86[EUR][1000 genomes]
rs73539907	0.86[EUR][1000 genomes]
rs73662516	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7813518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7815297	0.96[EUR][1000 genomes]
rs7815378	0.82[EUR][1000 genomes]
rs7815506	0.86[EUR][1000 genomes]
rs7815644	0.84[EUR][1000 genomes]
rs7821007	0.86[EUR][1000 genomes]
rs7827395	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7837344	0.86[EUR][1000 genomes]
rs7837923	0.82[EUR][1000 genomes]
rs7840161	0.88[EUR][1000 genomes]
rs7846023	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9644705	0.91[EUR][1000 genomes]
rs9644706	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9529600-9606400	Weak transcription	Esophagus	oesophagus
2	chr8:9535000-9608000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:9542200-9606800	Weak transcription	Small Intestine	intestine
4	chr8:9543400-9606400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:9550000-9627600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:9551200-9610600	Weak transcription	Fetal Brain Male	brain
7	chr8:9557400-9632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:9560600-9609200	Weak transcription	K562	blood
9	chr8:9561000-9616200	Weak transcription	Brain Substantia Nigra	brain
10	chr8:9562200-9608000	Weak transcription	Colon Smooth Muscle	Colon
11	chr8:9564000-9608200	Weak transcription	Colonic Mucosa	Colon
12	chr8:9565000-9606400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr8:9565000-9608000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:9565000-9616200	Weak transcription	Pancreas	Pancrea
15	chr8:9566000-9639400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr8:9567800-9611200	Weak transcription	NHEK	skin
17	chr8:9569000-9606200	Weak transcription	HSMMtube	muscle
18	chr8:9570000-9638600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr8:9571600-9606200	Weak transcription	Aorta	Aorta
20	chr8:9576000-9611400	Weak transcription	Fetal Heart	heart
21	chr8:9578600-9606200	Weak transcription	Left Ventricle	heart
22	chr8:9579400-9607200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr8:9579600-9606200	Weak transcription	Lung	lung
24	chr8:9585200-9627600	Weak transcription	Hela-S3	cervix
25	chr8:9586800-9609200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:9588600-9626000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr8:9592600-9606200	Weak transcription	Gastric	stomach
28	chr8:9593000-9606200	Weak transcription	Brain Hippocampus Middle	brain
29	chr8:9593000-9607400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr8:9593000-9611200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr8:9593200-9606400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr8:9593200-9607200	Weak transcription	Right Ventricle	heart
33	chr8:9593200-9610200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr8:9593400-9606200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr8:9593600-9606200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr8:9593600-9606600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr8:9593800-9606200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr8:9593800-9606200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr8:9593800-9606400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr8:9593800-9608000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr8:9593800-9610200	Weak transcription	Psoas Muscle	Psoas
42	chr8:9594000-9606200	Weak transcription	Fetal Intestine Small	intestine
43	chr8:9594000-9606200	Weak transcription	Ovary	ovary
44	chr8:9594000-9606200	Weak transcription	Thymus	Thymus
45	chr8:9594000-9607600	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr8:9594200-9606200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr8:9597600-9617000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr8:9597800-9606200	Weak transcription	Fetal Muscle Leg	muscle
49	chr8:9597800-9606400	Weak transcription	Spleen	Spleen
50	chr8:9598800-9610200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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