Variant report

Variant	rs3209608
Chromosome Location	chr8:9631165-9631166
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11249940	0.85[EUR][1000 genomes]
rs11249944	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11785739	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11988208	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11991831	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11995167	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12234900	0.93[EUR][1000 genomes]
rs12234999	0.93[EUR][1000 genomes]
rs12235001	0.93[EUR][1000 genomes]
rs28495967	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28675389	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs33944167	0.87[EUR][1000 genomes]
rs34614689	0.93[EUR][1000 genomes]
rs35052906	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35420737	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35721526	0.82[EUR][1000 genomes]
rs36036709	0.82[EUR][1000 genomes]
rs4383973	0.83[EUR][1000 genomes]
rs4386983	0.81[ASN][1000 genomes]
rs4474027	0.82[EUR][1000 genomes]
rs4629869	0.82[EUR][1000 genomes]
rs4841215	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57482128	0.85[EUR][1000 genomes]
rs57580633	0.82[EUR][1000 genomes]
rs57987233	0.85[EUR][1000 genomes]
rs58458097	0.83[EUR][1000 genomes]
rs58596872	0.89[EUR][1000 genomes]
rs59268701	0.83[EUR][1000 genomes]
rs60051555	0.83[EUR][1000 genomes]
rs60078276	0.82[EUR][1000 genomes]
rs60222666	0.89[EUR][1000 genomes]
rs60801852	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60857446	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60942347	0.87[EUR][1000 genomes]
rs61594550	0.83[EUR][1000 genomes]
rs61682841	0.82[EUR][1000 genomes]
rs6422356	0.85[EUR][1000 genomes]
rs6601358	0.87[EUR][1000 genomes]
rs6601362	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6986755	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6987259	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6987746	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6990116	0.87[EUR][1000 genomes]
rs6994452	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6995292	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6999382	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7001395	0.87[EUR][1000 genomes]
rs7009596	0.85[EUR][1000 genomes]
rs7010154	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7014218	0.87[EUR][1000 genomes]
rs73523224	0.82[EUR][1000 genomes]
rs73523249	0.83[EUR][1000 genomes]
rs73539904	0.82[EUR][1000 genomes]
rs73539907	0.82[EUR][1000 genomes]
rs73662516	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7813518	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7815297	0.87[EUR][1000 genomes]
rs7821007	0.82[EUR][1000 genomes]
rs7827395	0.93[EUR][1000 genomes]
rs7837344	0.82[EUR][1000 genomes]
rs7846023	0.89[EUR][1000 genomes]
rs9644705	0.83[EUR][1000 genomes]
rs9644706	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9557400-9632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:9566000-9639400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:9570000-9638600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:9603000-9638800	Weak transcription	Stomach Mucosa	stomach
5	chr8:9604200-9637200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:9609600-9634600	Weak transcription	Colonic Mucosa	Colon
7	chr8:9616000-9634400	Weak transcription	Fetal Heart	heart
8	chr8:9616800-9632200	Weak transcription	Pancreas	Pancrea
9	chr8:9618400-9637200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:9618600-9631600	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr8:9623800-9638800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr8:9624600-9633200	Weak transcription	NHEK	skin
13	chr8:9626200-9634800	Weak transcription	Lung	lung
14	chr8:9626200-9638800	Weak transcription	Small Intestine	intestine
15	chr8:9626400-9640000	Weak transcription	Gastric	stomach
16	chr8:9626800-9634000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:9627800-9638400	Weak transcription	Fetal Brain Male	brain
18	chr8:9628000-9634200	Weak transcription	A549	lung
19	chr8:9628000-9637400	Weak transcription	K562	blood
20	chr8:9628200-9631200	Weak transcription	Fetal Intestine Small	intestine
21	chr8:9628200-9633200	Weak transcription	Primary T cells from cord blood	blood
22	chr8:9628200-9633200	Weak transcription	HMEC	breast
23	chr8:9628200-9634200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr8:9628200-9634800	Weak transcription	Esophagus	oesophagus
25	chr8:9628200-9635000	Weak transcription	Spleen	Spleen
26	chr8:9628200-9636800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr8:9628200-9638800	Weak transcription	Psoas Muscle	Psoas
28	chr8:9628200-9640000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr8:9628200-9640200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr8:9628400-9632200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr8:9628400-9632400	Weak transcription	Left Ventricle	heart
32	chr8:9628400-9633200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr8:9628400-9633200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr8:9628400-9633200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr8:9628400-9633200	Weak transcription	Osteobl	bone
36	chr8:9628400-9633400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr8:9628400-9633400	Weak transcription	Aorta	Aorta
38	chr8:9628400-9633400	Weak transcription	Ovary	ovary
39	chr8:9628400-9633600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr8:9628400-9634000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr8:9628400-9634800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr8:9628400-9634800	Weak transcription	Fetal Stomach	stomach
43	chr8:9628400-9635000	Weak transcription	Right Ventricle	heart
44	chr8:9628400-9635000	Weak transcription	HUVEC	blood vessel
45	chr8:9628400-9638000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr8:9628400-9638000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr8:9628400-9638800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr8:9628600-9631400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr8:9628600-9632000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr8:9628600-9632000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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