Variant report

Variant	rs7846023
Chromosome Location	chr8:9593924-9593925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10086535	0.90[EUR][1000 genomes]
rs10090277	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10090998	0.90[EUR][1000 genomes]
rs10090999	0.90[EUR][1000 genomes]
rs10093972	0.87[CEU][hapmap];0.94[GIH][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs10105767	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs10105968	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs11249940	0.96[EUR][1000 genomes]
rs11249944	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11785739	0.81[EUR][1000 genomes]
rs11984920	0.97[GIH][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes]
rs11988208	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11991831	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11995167	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12056794	0.87[CEU][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs12234900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12234999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12235001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28495967	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28499425	0.92[EUR][1000 genomes]
rs28562614	0.90[EUR][1000 genomes]
rs28675389	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3209608	0.89[EUR][1000 genomes]
rs33944167	0.98[EUR][1000 genomes]
rs34614689	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35052906	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35420737	0.92[EUR][1000 genomes]
rs35721526	0.92[EUR][1000 genomes]
rs36036709	0.92[EUR][1000 genomes]
rs4319098	0.87[CEU][hapmap];0.97[GIH][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs4348499	0.88[EUR][1000 genomes]
rs4380943	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs4383973	0.87[CEU][hapmap];0.96[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs4474027	0.87[CEU][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs4529464	0.86[EUR][1000 genomes]
rs4612344	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs4629869	0.87[CEU][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs4841215	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs5002814	0.90[EUR][1000 genomes]
rs5002815	0.87[CEU][hapmap];0.87[GIH][hapmap];0.84[TSI][hapmap];0.90[EUR][1000 genomes]
rs5018578	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs55924085	0.90[EUR][1000 genomes]
rs57000316	0.90[EUR][1000 genomes]
rs57024674	0.90[EUR][1000 genomes]
rs57331392	0.90[EUR][1000 genomes]
rs57482128	0.96[EUR][1000 genomes]
rs57580633	0.92[EUR][1000 genomes]
rs57987233	0.96[EUR][1000 genomes]
rs58458097	0.94[EUR][1000 genomes]
rs58596872	1.00[EUR][1000 genomes]
rs59201801	0.92[EUR][1000 genomes]
rs59268701	0.94[EUR][1000 genomes]
rs59519630	0.90[EUR][1000 genomes]
rs59940446	0.90[EUR][1000 genomes]
rs60051555	0.94[EUR][1000 genomes]
rs60078276	0.92[EUR][1000 genomes]
rs60222666	1.00[EUR][1000 genomes]
rs60801852	0.94[EUR][1000 genomes]
rs60857446	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60942347	0.98[EUR][1000 genomes]
rs61594550	0.94[EUR][1000 genomes]
rs61682841	0.92[EUR][1000 genomes]
rs6422356	1.00[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6601358	0.98[EUR][1000 genomes]
rs6601362	0.81[EUR][1000 genomes]
rs6981763	0.90[EUR][1000 genomes]
rs6984737	0.87[CEU][hapmap];0.87[GIH][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes]
rs6985140	0.87[CEU][hapmap];0.88[GIH][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs6986755	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6987259	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6987746	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6990116	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs6992432	0.88[GIH][hapmap]
rs6994452	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6995292	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6999382	0.81[EUR][1000 genomes]
rs7000182	0.88[EUR][1000 genomes]
rs7001395	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes]
rs7002917	0.87[CEU][hapmap];0.90[GIH][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes]
rs7009596	0.96[EUR][1000 genomes]
rs7009863	0.81[EUR][1000 genomes]
rs7010154	1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7014218	0.98[EUR][1000 genomes]
rs7016632	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs7018268	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs7018348	0.88[EUR][1000 genomes]
rs73523222	0.88[EUR][1000 genomes]
rs73523224	0.92[EUR][1000 genomes]
rs73523249	0.94[EUR][1000 genomes]
rs73535828	0.88[EUR][1000 genomes]
rs73537955	0.90[EUR][1000 genomes]
rs73537959	0.88[EUR][1000 genomes]
rs73537971	0.90[EUR][1000 genomes]
rs73539904	0.92[EUR][1000 genomes]
rs73539907	0.92[EUR][1000 genomes]
rs73662516	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7813518	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7815297	0.98[EUR][1000 genomes]
rs7815378	0.88[EUR][1000 genomes]
rs7815506	0.92[EUR][1000 genomes]
rs7815644	0.90[EUR][1000 genomes]
rs7818016	0.88[EUR][1000 genomes]
rs7821007	0.92[EUR][1000 genomes]
rs7827395	0.96[EUR][1000 genomes]
rs7837344	0.92[EUR][1000 genomes]
rs7837923	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7840161	0.94[EUR][1000 genomes]
rs9644705	0.94[EUR][1000 genomes]
rs9644706	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9513400-9605400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:9529600-9606400	Weak transcription	Esophagus	oesophagus
3	chr8:9535000-9608000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:9542200-9606800	Weak transcription	Small Intestine	intestine
5	chr8:9543400-9606400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:9550000-9627600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:9551200-9610600	Weak transcription	Fetal Brain Male	brain
8	chr8:9557400-9632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:9558400-9597600	Weak transcription	Spleen	Spleen
10	chr8:9558400-9605000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr8:9560600-9609200	Weak transcription	K562	blood
12	chr8:9561000-9616200	Weak transcription	Brain Substantia Nigra	brain
13	chr8:9562200-9608000	Weak transcription	Colon Smooth Muscle	Colon
14	chr8:9564000-9608200	Weak transcription	Colonic Mucosa	Colon
15	chr8:9565000-9606400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr8:9565000-9608000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:9565000-9616200	Weak transcription	Pancreas	Pancrea
18	chr8:9566000-9639400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr8:9567800-9605400	Weak transcription	NHLF	lung
20	chr8:9567800-9611200	Weak transcription	NHEK	skin
21	chr8:9569000-9606200	Weak transcription	HSMMtube	muscle
22	chr8:9570000-9638600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr8:9571600-9606200	Weak transcription	Aorta	Aorta
24	chr8:9576000-9611400	Weak transcription	Fetal Heart	heart
25	chr8:9577200-9594000	Strong transcription	Placenta	Placenta
26	chr8:9578600-9605600	Weak transcription	HMEC	breast
27	chr8:9578600-9606200	Weak transcription	Left Ventricle	heart
28	chr8:9579400-9607200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr8:9579600-9606200	Weak transcription	Lung	lung
30	chr8:9585200-9627600	Weak transcription	Hela-S3	cervix
31	chr8:9586600-9594200	Strong transcription	Adipose Nuclei	Adipose
32	chr8:9586800-9609200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:9587000-9594000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr8:9588600-9626000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr8:9589600-9594000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr8:9589800-9594000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr8:9590000-9594000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr8:9590000-9594000	Strong transcription	Fetal Lung	lung
39	chr8:9590600-9594000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr8:9591200-9594000	Strong transcription	Osteobl	bone
41	chr8:9591800-9594000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr8:9591800-9594000	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr8:9591800-9594000	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr8:9592000-9594000	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr8:9592000-9594000	Strong transcription	Primary B cells from peripheral blood	blood
46	chr8:9592000-9594000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr8:9592000-9594000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr8:9592200-9594000	Strong transcription	Primary B cells from cord blood	blood
49	chr8:9592200-9594000	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr8:9592200-9594000	Strong transcription	Primary hematopoietic stem cells	blood

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