Variant report

Variant	rs60801852
Chromosome Location	chr8:9628358-9628359
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9622564..9624486-chr8:9628196..9629873,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10090998	0.84[EUR][1000 genomes]
rs10090999	0.84[EUR][1000 genomes]
rs11249940	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11249944	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11785739	0.83[EUR][1000 genomes]
rs11988208	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11991831	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11995167	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12056794	0.82[EUR][1000 genomes]
rs12234900	0.98[EUR][1000 genomes]
rs12234999	0.98[EUR][1000 genomes]
rs12235001	0.98[EUR][1000 genomes]
rs28495967	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28562614	0.84[EUR][1000 genomes]
rs28675389	0.98[EUR][1000 genomes]
rs3209608	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs33944167	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34614689	0.98[EUR][1000 genomes]
rs35052906	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35420737	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35721526	0.86[EUR][1000 genomes]
rs36036709	0.86[EUR][1000 genomes]
rs4319098	0.81[EUR][1000 genomes]
rs4348499	0.82[EUR][1000 genomes]
rs4380943	0.81[EUR][1000 genomes]
rs4383973	0.88[EUR][1000 genomes]
rs4474027	0.86[EUR][1000 genomes]
rs4529464	0.81[ASN][1000 genomes]
rs4629869	0.86[EUR][1000 genomes]
rs4841215	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5002814	0.84[EUR][1000 genomes]
rs5002815	0.84[EUR][1000 genomes]
rs55924085	0.84[EUR][1000 genomes]
rs57331392	0.84[EUR][1000 genomes]
rs57482128	0.89[EUR][1000 genomes]
rs57580633	0.86[EUR][1000 genomes]
rs57987233	0.89[EUR][1000 genomes]
rs58458097	0.88[EUR][1000 genomes]
rs58596872	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59201801	0.86[EUR][1000 genomes]
rs59268701	0.88[EUR][1000 genomes]
rs59519630	0.84[EUR][1000 genomes]
rs59940446	0.84[EUR][1000 genomes]
rs60051555	0.88[EUR][1000 genomes]
rs60078276	0.86[EUR][1000 genomes]
rs60222666	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60857446	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60942347	0.91[EUR][1000 genomes]
rs61594550	0.88[EUR][1000 genomes]
rs61682841	0.86[EUR][1000 genomes]
rs6422356	0.89[EUR][1000 genomes]
rs6601358	0.91[EUR][1000 genomes]
rs6601362	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6981763	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6985140	0.84[EUR][1000 genomes]
rs6986755	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6987259	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6987746	0.85[EUR][1000 genomes]
rs6990116	0.91[EUR][1000 genomes]
rs6994452	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6995292	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6999382	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7001395	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7009596	0.89[EUR][1000 genomes]
rs7010154	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7014218	0.91[EUR][1000 genomes]
rs73523222	0.82[EUR][1000 genomes]
rs73523224	0.86[EUR][1000 genomes]
rs73523249	0.88[EUR][1000 genomes]
rs73537955	0.84[EUR][1000 genomes]
rs73537959	0.82[EUR][1000 genomes]
rs73537971	0.84[EUR][1000 genomes]
rs73539904	0.86[EUR][1000 genomes]
rs73539907	0.86[EUR][1000 genomes]
rs73662516	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7813518	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7815297	0.91[EUR][1000 genomes]
rs7821007	0.86[EUR][1000 genomes]
rs7827395	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7837344	0.86[EUR][1000 genomes]
rs7846023	0.94[EUR][1000 genomes]
rs9644705	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9644706	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9557400-9632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:9566000-9639400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:9570000-9638600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:9603000-9638800	Weak transcription	Stomach Mucosa	stomach
5	chr8:9604200-9637200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:9609600-9634600	Weak transcription	Colonic Mucosa	Colon
7	chr8:9616000-9634400	Weak transcription	Fetal Heart	heart
8	chr8:9616800-9632200	Weak transcription	Pancreas	Pancrea
9	chr8:9618000-9628600	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr8:9618400-9628600	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr8:9618400-9628800	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr8:9618400-9637200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:9618600-9628400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr8:9618600-9628600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:9618600-9628600	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr8:9618600-9628800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:9618600-9628800	Strong transcription	Liver	Liver
18	chr8:9618600-9629200	Strong transcription	Primary hematopoietic stem cells	blood
19	chr8:9618600-9629600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr8:9618600-9630000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:9618600-9630200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr8:9618600-9630400	Strong transcription	Dnd41	blood
23	chr8:9618600-9631600	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr8:9618800-9628800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr8:9618800-9628800	Strong transcription	Placenta	Placenta
26	chr8:9618800-9629000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:9618800-9630400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:9619000-9628400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr8:9619000-9628400	Strong transcription	Osteobl	bone
30	chr8:9619000-9628600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr8:9619000-9628600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr8:9619000-9628600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:9619000-9628600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr8:9619000-9628600	Strong transcription	Adipose Nuclei	Adipose
35	chr8:9619000-9628600	Strong transcription	Fetal Intestine Large	intestine
36	chr8:9619000-9628600	Strong transcription	GM12878-XiMat	blood
37	chr8:9619000-9628600	Strong transcription	HSMM	muscle
38	chr8:9619000-9628600	Strong transcription	HSMMtube	muscle
39	chr8:9619000-9628800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr8:9619000-9628800	Strong transcription	Duodenum Mucosa	Duodenum
41	chr8:9619000-9628800	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr8:9619000-9629000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr8:9619000-9630400	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr8:9619000-9630400	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr8:9619200-9628400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr8:9619200-9628400	Strong transcription	Left Ventricle	heart
47	chr8:9619200-9628600	Strong transcription	Stomach Smooth Muscle	stomach
48	chr8:9619200-9628800	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr8:9619200-9629000	Strong transcription	Brain Anterior Caudate	brain
50	chr8:9620800-9628400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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