Variant report

Variant	rs5002815
Chromosome Location	chr8:9467171-9467172
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:9463841..9465421-chr8:9465686..9468571,2	K562	blood:
2	chr8:9463061..9465421-chr8:9465686..9469461,3	K562	blood:
3	chr8:9465333..9467954-chr8:9469565..9472084,2	MCF-7	breast:

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10086535	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10090277	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10090998	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10090999	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10093972	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10105767	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10105968	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11249940	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11249944	0.84[EUR][1000 genomes]
rs11984920	0.88[CEU][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.80[MKK][hapmap];0.84[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11988208	0.86[CEU][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs11991831	0.84[EUR][1000 genomes]
rs11995167	0.87[CEU][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs12056794	0.87[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap]
rs12234900	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs12234999	0.87[CEU][hapmap];0.87[GIH][hapmap];0.86[EUR][1000 genomes]
rs12235001	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs28499425	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28562614	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28675389	0.86[EUR][1000 genomes]
rs33944167	0.88[EUR][1000 genomes]
rs34614689	0.86[EUR][1000 genomes]
rs35052906	0.90[EUR][1000 genomes]
rs35420737	0.82[EUR][1000 genomes]
rs35721526	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36036709	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4319098	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4348499	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4380943	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4383973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.84[TSI][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4474027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4612344	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4629869	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.84[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4841215	0.87[CEU][hapmap]
rs5002814	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5018578	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55924085	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57000316	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57024674	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57331392	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57482128	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57580633	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57987233	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58458097	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58596872	0.90[EUR][1000 genomes]
rs58981097	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59201801	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59268701	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59519630	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59940446	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60051555	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60078276	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60222666	0.90[EUR][1000 genomes]
rs60801852	0.84[EUR][1000 genomes]
rs60857446	0.84[EUR][1000 genomes]
rs60942347	0.88[EUR][1000 genomes]
rs61594550	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61682841	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6422356	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs6601358	0.88[EUR][1000 genomes]
rs6981763	0.81[EUR][1000 genomes]
rs6984737	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.84[TSI][hapmap];0.96[EUR][1000 genomes]
rs6985140	0.94[CHD][hapmap];0.88[JPT][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs6986755	0.87[CEU][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs6987259	0.87[GIH][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs6987746	0.82[EUR][1000 genomes]
rs6990116	0.87[CEU][hapmap];0.87[GIH][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes]
rs6994452	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs6995292	0.86[CEU][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs7000182	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7001395	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs7002917	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.84[TSI][hapmap];0.96[EUR][1000 genomes]
rs7009596	0.86[EUR][1000 genomes]
rs7009863	0.92[EUR][1000 genomes]
rs7010154	0.87[CEU][hapmap];0.83[GIH][hapmap];0.84[TSI][hapmap]
rs7013369	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7014218	0.88[EUR][1000 genomes]
rs7016632	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7018268	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7018348	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73523222	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73523224	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73523249	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73535828	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73537955	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73537959	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73537971	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73539904	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73539907	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73662516	0.84[EUR][1000 genomes]
rs7813518	0.84[EUR][1000 genomes]
rs7815297	0.88[EUR][1000 genomes]
rs7815378	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7815506	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7815644	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7818016	0.90[EUR][1000 genomes]
rs7821007	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7827395	0.86[EUR][1000 genomes]
rs7829677	0.80[EUR][1000 genomes]
rs7837344	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7837923	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7840161	0.96[EUR][1000 genomes]
rs7846023	0.87[CEU][hapmap];0.87[GIH][hapmap];0.84[TSI][hapmap];0.90[EUR][1000 genomes]
rs9644705	0.88[EUR][1000 genomes]
rs9644706	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9435400-9468400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:9435600-9472400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:9435800-9472600	Weak transcription	HSMMtube	muscle
4	chr8:9437400-9468000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:9439400-9472400	Weak transcription	HSMM	muscle
6	chr8:9450200-9470600	Weak transcription	NHLF	lung
7	chr8:9450200-9472200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:9450600-9469600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:9450600-9480200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr8:9450800-9468400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr8:9450800-9471000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:9455400-9470600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr8:9455400-9471800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr8:9457000-9470400	Weak transcription	Small Intestine	intestine
15	chr8:9460000-9469600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr8:9460200-9470600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:9461000-9470800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:9461000-9486400	Weak transcription	Fetal Intestine Small	intestine
19	chr8:9462200-9473800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:9462600-9468800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr8:9463000-9479800	Weak transcription	Dnd41	blood
22	chr8:9463200-9480600	Weak transcription	Primary T cells from cord blood	blood
23	chr8:9464000-9470000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:9464600-9468400	Weak transcription	Brain Anterior Caudate	brain
25	chr8:9465400-9467200	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr8:9465600-9467600	Enhancers	Psoas Muscle	Psoas
27	chr8:9465600-9469600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr8:9466000-9467200	Enhancers	Brain Cingulate Gyrus	brain
29	chr8:9466000-9468200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr8:9466200-9467200	Enhancers	Fetal Heart	heart
31	chr8:9466200-9468400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr8:9466200-9473000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:9466200-9480000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr8:9466200-9484400	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr8:9466400-9468400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr8:9466400-9468400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr8:9466400-9468600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr8:9466400-9469800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr8:9466400-9470000	Weak transcription	Ovary	ovary
40	chr8:9466400-9470200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr8:9466400-9470200	Weak transcription	Right Atrium	heart
42	chr8:9466400-9470400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr8:9466400-9470600	Weak transcription	Brain Angular Gyrus	brain
44	chr8:9466400-9470800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr8:9466400-9471800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr8:9466400-9471800	Weak transcription	NHDF-Ad	bronchial
47	chr8:9466400-9472400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr8:9466400-9472600	Weak transcription	Primary B cells from cord blood	blood
49	chr8:9466400-9472600	Weak transcription	Pancreas	Pancrea
50	chr8:9466400-9472600	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links