Variant report

Variant	rs7010154
Chromosome Location	chr8:9634874-9634875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10090277	1.00[CEU][hapmap]
rs10093972	0.87[CEU][hapmap];0.81[CHD][hapmap];0.90[GIH][hapmap];0.81[TSI][hapmap]
rs10105767	0.87[CEU][hapmap]
rs10105968	0.87[CEU][hapmap]
rs11249940	0.83[EUR][1000 genomes]
rs11249944	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11785739	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11787443	0.82[EUR][1000 genomes]
rs11984920	0.86[CHD][hapmap];0.93[GIH][hapmap];0.83[TSI][hapmap]
rs11988208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11991831	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11995167	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12056794	0.87[CEU][hapmap];0.85[CHB][hapmap];0.81[TSI][hapmap]
rs12234900	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12234999	1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes]
rs12235001	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs28495967	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28675389	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3209608	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33944167	0.85[EUR][1000 genomes]
rs34614689	0.91[EUR][1000 genomes]
rs35052906	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35420737	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4319098	0.87[CEU][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap]
rs4380943	0.87[CEU][hapmap]
rs4383973	0.87[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs4386983	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4474027	0.87[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap]
rs4612344	0.87[CEU][hapmap]
rs4629869	0.87[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap]
rs4841215	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5002815	0.87[CEU][hapmap];0.83[GIH][hapmap];0.84[TSI][hapmap]
rs5018578	0.85[CEU][hapmap]
rs57482128	0.83[EUR][1000 genomes]
rs57987233	0.83[EUR][1000 genomes]
rs58458097	0.82[EUR][1000 genomes]
rs58596872	0.87[EUR][1000 genomes]
rs59268701	0.82[EUR][1000 genomes]
rs60051555	0.82[EUR][1000 genomes]
rs60222666	0.87[EUR][1000 genomes]
rs60801852	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60857446	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60942347	0.85[EUR][1000 genomes]
rs61594550	0.82[EUR][1000 genomes]
rs6422356	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs6601358	0.85[EUR][1000 genomes]
rs6601362	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6984737	0.87[CEU][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap]
rs6985140	0.87[CEU][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap];0.84[GIH][hapmap];1.00[TSI][hapmap]
rs6986755	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6987259	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6987746	0.87[AMR][1000 genomes]
rs6990116	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs6994452	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6995292	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6999382	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7001395	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7002917	0.87[CEU][hapmap];0.87[GIH][hapmap];0.81[TSI][hapmap]
rs7009596	0.83[EUR][1000 genomes]
rs7014218	0.85[EUR][1000 genomes]
rs7016632	0.87[CEU][hapmap]
rs7018268	0.87[CEU][hapmap]
rs73523249	0.82[EUR][1000 genomes]
rs73662516	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7813518	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7815297	0.85[EUR][1000 genomes]
rs7827395	0.91[EUR][1000 genomes]
rs7837923	1.00[CEU][hapmap]
rs7846023	1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs9644705	0.81[EUR][1000 genomes]
rs9644706	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9566000-9639400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:9570000-9638600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:9603000-9638800	Weak transcription	Stomach Mucosa	stomach
4	chr8:9604200-9637200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:9618400-9637200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:9623800-9638800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr8:9626200-9638800	Weak transcription	Small Intestine	intestine
8	chr8:9626400-9640000	Weak transcription	Gastric	stomach
9	chr8:9627800-9638400	Weak transcription	Fetal Brain Male	brain
10	chr8:9628000-9637400	Weak transcription	K562	blood
11	chr8:9628200-9635000	Weak transcription	Spleen	Spleen
12	chr8:9628200-9636800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr8:9628200-9638800	Weak transcription	Psoas Muscle	Psoas
14	chr8:9628200-9640000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:9628200-9640200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:9628400-9635000	Weak transcription	Right Ventricle	heart
17	chr8:9628400-9635000	Weak transcription	HUVEC	blood vessel
18	chr8:9628400-9638000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr8:9628400-9638000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:9628400-9638800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr8:9628600-9636800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr8:9628600-9637000	Weak transcription	HepG2	liver
23	chr8:9628600-9640400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr8:9628800-9638000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr8:9628800-9639000	Weak transcription	Fetal Kidney	kidney
26	chr8:9628800-9639200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr8:9629000-9635800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr8:9629200-9635000	Weak transcription	Brain Germinal Matrix	brain
29	chr8:9629200-9638000	Weak transcription	Brain Angular Gyrus	brain
30	chr8:9632000-9635400	Strong transcription	Fetal Muscle Leg	muscle
31	chr8:9632000-9637000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr8:9632000-9637200	Strong transcription	Fetal Lung	lung
33	chr8:9632000-9637400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr8:9632200-9635400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr8:9632200-9637600	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr8:9632600-9637000	Weak transcription	Pancreas	Pancrea
37	chr8:9633000-9636000	Strong transcription	Dnd41	blood
38	chr8:9633200-9635400	Strong transcription	Left Ventricle	heart
39	chr8:9633200-9636200	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr8:9633200-9636200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr8:9633200-9636600	Strong transcription	Liver	Liver
42	chr8:9633200-9636800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr8:9633200-9637000	Strong transcription	Primary B cells from cord blood	blood
44	chr8:9633200-9637200	Strong transcription	Primary T cells from cord blood	blood
45	chr8:9633400-9635400	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr8:9633400-9635400	Strong transcription	Ovary	ovary
47	chr8:9633400-9635400	Strong transcription	Thymus	Thymus
48	chr8:9633400-9635600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr8:9633400-9635600	Strong transcription	Placenta	Placenta
50	chr8:9633400-9636400	Strong transcription	Primary monocytes fromperipheralblood	blood

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