Variant report

Variant	rs6601362
Chromosome Location	chr8:9643564-9643565
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9640376..9642829-chr8:9643116..9645666,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10090277	1.00[CEU][hapmap]
rs10093972	0.87[CEU][hapmap]
rs10098738	0.83[ASN][1000 genomes]
rs10105767	0.87[CEU][hapmap]
rs10105968	0.87[CEU][hapmap]
rs10107341	0.82[ASN][1000 genomes]
rs11249944	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11249947	0.84[ASN][1000 genomes]
rs11249959	0.82[ASN][1000 genomes]
rs11249960	0.82[ASN][1000 genomes]
rs11785739	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11787443	0.87[EUR][1000 genomes]
rs11988208	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11991831	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11995167	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12056794	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs12234900	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12234999	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12235001	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2137789	0.82[ASN][1000 genomes]
rs28495967	0.81[AMR][1000 genomes]
rs28675389	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2898223	0.84[ASN][1000 genomes]
rs3209608	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34614689	0.85[EUR][1000 genomes]
rs35052906	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35420737	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4319098	0.87[CEU][hapmap];0.85[CHB][hapmap]
rs4380943	0.87[CEU][hapmap];0.85[CHB][hapmap]
rs4383973	0.87[CEU][hapmap]
rs4386983	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4474027	0.87[CEU][hapmap]
rs4612344	0.87[CEU][hapmap]
rs4629869	0.87[CEU][hapmap]
rs4840447	0.92[JPT][hapmap]
rs4841215	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5002815	0.87[CEU][hapmap]
rs5018578	0.85[CEU][hapmap]
rs58596872	0.81[EUR][1000 genomes]
rs59902786	0.82[ASN][1000 genomes]
rs60222666	0.81[EUR][1000 genomes]
rs60801852	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60857446	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6422356	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6984737	0.87[CEU][hapmap]
rs6985140	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs6986755	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6987259	0.85[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6987746	0.87[AMR][1000 genomes]
rs6990116	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6991395	0.82[ASN][1000 genomes]
rs6994452	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6995292	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6999382	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7000483	0.82[ASN][1000 genomes]
rs7001395	1.00[CEU][hapmap]
rs7002917	0.87[CEU][hapmap]
rs7010154	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7013004	0.82[ASN][1000 genomes]
rs7016632	0.87[CEU][hapmap]
rs7018268	0.87[CEU][hapmap]
rs7018399	0.81[ASN][1000 genomes]
rs73662516	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7813518	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7827395	0.85[EUR][1000 genomes]
rs7835778	0.81[ASN][1000 genomes]
rs7846023	1.00[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv16865	chr8:9642195-9712807	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9638600-9644800	Weak transcription	HSMM	muscle
2	chr8:9638600-9645400	Weak transcription	Fetal Brain Male	brain
3	chr8:9640400-9646800	Weak transcription	Pancreas	Pancrea
4	chr8:9641800-9643600	Weak transcription	Fetal Heart	heart
5	chr8:9642600-9644200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr8:9642800-9648800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:9643200-9643800	ZNF genes & repeats	HepG2	liver

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