Variant report

Variant	rs11787443
Chromosome Location	chr8:9641811-9641812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9640376..9642829-chr8:9643116..9645666,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10090277	1.00[CEU][hapmap]
rs10093972	0.87[CEU][hapmap];0.87[GIH][hapmap]
rs10098747	0.84[AFR][1000 genomes]
rs10105767	0.87[CEU][hapmap]
rs10105968	0.87[CEU][hapmap]
rs1055328	0.85[ASW][hapmap];0.95[LWK][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes]
rs11249944	0.87[CEU][hapmap]
rs11249947	0.81[AFR][1000 genomes]
rs11785739	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11984920	0.87[GIH][hapmap]
rs11988208	1.00[CEU][hapmap]
rs11995167	1.00[CEU][hapmap]
rs12056794	0.87[CEU][hapmap];0.86[CHB][hapmap]
rs12234900	1.00[CEU][hapmap]
rs12234999	1.00[CEU][hapmap];0.87[GIH][hapmap];0.81[TSI][hapmap]
rs12235001	1.00[CEU][hapmap]
rs34614689	0.81[AMR][1000 genomes]
rs4319098	0.87[CEU][hapmap];0.90[GIH][hapmap];0.82[TSI][hapmap]
rs4380943	0.87[CEU][hapmap]
rs4383973	0.87[CEU][hapmap];0.83[GIH][hapmap];0.90[TSI][hapmap]
rs4386983	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4474027	0.87[CEU][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap]
rs4612344	0.87[CEU][hapmap]
rs4629869	0.87[CEU][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap]
rs4841215	1.00[CEU][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs5002815	0.87[CEU][hapmap];0.80[GIH][hapmap]
rs5018578	0.85[CEU][hapmap]
rs6422356	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];1.00[MEX][hapmap]
rs6601362	0.87[EUR][1000 genomes]
rs6984737	0.87[CEU][hapmap]
rs6985140	0.87[CEU][hapmap];0.86[CHB][hapmap];0.90[TSI][hapmap]
rs6986755	1.00[CEU][hapmap];0.87[GIH][hapmap];0.90[TSI][hapmap]
rs6987259	0.85[CEU][hapmap];0.87[GIH][hapmap];0.82[TSI][hapmap]
rs6990116	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.90[TSI][hapmap]
rs6994452	1.00[CEU][hapmap]
rs6995292	1.00[CEU][hapmap]
rs6999382	0.87[EUR][1000 genomes]
rs7001395	1.00[CEU][hapmap]
rs7002917	0.87[CEU][hapmap]
rs7010154	1.00[CEU][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs7016632	0.87[CEU][hapmap]
rs7018268	0.87[CEU][hapmap]
rs7837923	1.00[CEU][hapmap]
rs7846023	1.00[CEU][hapmap];0.87[GIH][hapmap];0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9635400-9642000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:9637400-9642000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:9638000-9642000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:9638600-9642000	Enhancers	Colon Smooth Muscle	Colon
5	chr8:9638600-9644800	Weak transcription	HSMM	muscle
6	chr8:9638600-9645400	Weak transcription	Fetal Brain Male	brain
7	chr8:9639000-9642000	Weak transcription	Primary T cells from cord blood	blood
8	chr8:9640000-9642200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:9640400-9646800	Weak transcription	Pancreas	Pancrea
10	chr8:9641000-9642600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:9641600-9642200	Enhancers	HMEC	breast
12	chr8:9641600-9642400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:9641800-9642000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr8:9641800-9643600	Weak transcription	Fetal Heart	heart

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