Variant report

Variant	rs4841215
Chromosome Location	chr8:9638308-9638309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10090277	1.00[CEU][hapmap]
rs10093972	0.87[CEU][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap]
rs10105767	0.87[CEU][hapmap]
rs10105968	0.87[CEU][hapmap]
rs11249944	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11249947	0.80[ASN][1000 genomes]
rs11785739	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11787443	0.87[EUR][1000 genomes]
rs11984920	0.86[CHD][hapmap];0.90[GIH][hapmap]
rs11988208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11991831	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11995167	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12056794	0.87[CEU][hapmap];0.85[CHB][hapmap]
rs12234900	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12234999	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs12235001	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs28495967	0.81[AMR][1000 genomes]
rs28675389	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2898223	0.80[ASN][1000 genomes]
rs3209608	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34614689	0.85[EUR][1000 genomes]
rs35052906	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35420737	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4319098	0.87[CEU][hapmap];0.90[GIH][hapmap];0.82[TSI][hapmap]
rs4380943	0.87[CEU][hapmap]
rs4383973	0.87[CEU][hapmap];0.89[GIH][hapmap];0.90[TSI][hapmap]
rs4386983	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4474027	0.87[CEU][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap]
rs4612344	0.87[CEU][hapmap]
rs4629869	0.87[CEU][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap]
rs5002815	0.87[CEU][hapmap]
rs5018578	0.85[CEU][hapmap]
rs58596872	0.81[EUR][1000 genomes]
rs60222666	0.81[EUR][1000 genomes]
rs60801852	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60857446	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6422356	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[GIH][hapmap]
rs6601362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6984737	0.87[CEU][hapmap]
rs6985140	0.87[CEU][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];0.90[TSI][hapmap]
rs6986755	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6987259	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6987746	0.87[AMR][1000 genomes]
rs6990116	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap]
rs6994452	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6995292	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6999382	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7001395	1.00[CEU][hapmap]
rs7002917	0.87[CEU][hapmap];0.83[GIH][hapmap]
rs7010154	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7016632	0.87[CEU][hapmap]
rs7018268	0.87[CEU][hapmap]
rs7018399	0.83[AFR][1000 genomes]
rs73662516	0.81[AMR][1000 genomes]
rs7813518	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7827395	0.85[EUR][1000 genomes]
rs7837923	1.00[CEU][hapmap]
rs7846023	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9566000-9639400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:9570000-9638600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:9603000-9638800	Weak transcription	Stomach Mucosa	stomach
4	chr8:9623800-9638800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr8:9626200-9638800	Weak transcription	Small Intestine	intestine
6	chr8:9626400-9640000	Weak transcription	Gastric	stomach
7	chr8:9627800-9638400	Weak transcription	Fetal Brain Male	brain
8	chr8:9628200-9638800	Weak transcription	Psoas Muscle	Psoas
9	chr8:9628200-9640000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr8:9628200-9640200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:9628400-9638800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr8:9628600-9640400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr8:9628800-9639000	Weak transcription	Fetal Kidney	kidney
14	chr8:9628800-9639200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr8:9634200-9638600	Strong transcription	HSMM	muscle
16	chr8:9634400-9640000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:9634400-9640000	Weak transcription	Osteobl	bone
18	chr8:9634400-9641600	Weak transcription	Aorta	Aorta
19	chr8:9634800-9639000	Weak transcription	Fetal Heart	heart
20	chr8:9634800-9641600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:9635200-9638800	Weak transcription	A549	lung
22	chr8:9635200-9640200	Weak transcription	Lung	lung
23	chr8:9635400-9638400	Weak transcription	Fetal Thymus	thymus
24	chr8:9635400-9638400	Weak transcription	GM12878-XiMat	blood
25	chr8:9635400-9638600	Weak transcription	Fetal Muscle Leg	muscle
26	chr8:9635400-9638600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr8:9635400-9638800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr8:9635400-9638800	Weak transcription	Esophagus	oesophagus
29	chr8:9635400-9639000	Weak transcription	HSMMtube	muscle
30	chr8:9635400-9639200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr8:9635400-9639200	Weak transcription	HUVEC	blood vessel
32	chr8:9635400-9639200	Weak transcription	NHEK	skin
33	chr8:9635400-9639400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:9635400-9639400	Weak transcription	Brain Anterior Caudate	brain
35	chr8:9635400-9640000	Weak transcription	Spleen	Spleen
36	chr8:9635400-9640400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr8:9635400-9641000	Weak transcription	Thymus	Thymus
38	chr8:9635400-9641200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr8:9635400-9641200	Weak transcription	Left Ventricle	heart
40	chr8:9635400-9641400	Weak transcription	Ovary	ovary
41	chr8:9635400-9641600	Weak transcription	HMEC	breast
42	chr8:9635400-9641800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr8:9635400-9642000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr8:9635600-9638600	Weak transcription	Primary B cells from peripheral blood	blood
45	chr8:9635600-9638600	Weak transcription	Placenta	Placenta
46	chr8:9635800-9638600	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr8:9635800-9638800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr8:9635800-9639000	Weak transcription	NH-A	brain
49	chr8:9635800-9640200	Weak transcription	Fetal Brain Female	brain
50	chr8:9635800-9641400	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links