Variant report

Variant	rs10090277
Chromosome Location	chr8:9450886-9450887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9450877..9453725-chr8:9457625..9461148,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PPP1R3B-12	chr8:9450067-9451440	ncRnaDb_ncrna_FR149560_1

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10086535	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10090998	0.82[EUR][1000 genomes]
rs10090999	0.82[EUR][1000 genomes]
rs10093972	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10105767	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10105968	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11249940	0.88[EUR][1000 genomes]
rs11249944	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs11984920	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11988208	1.00[CEU][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs11991831	0.82[EUR][1000 genomes]
rs11995167	1.00[CEU][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs12056794	0.86[CEU][hapmap];0.84[JPT][hapmap]
rs12234900	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12234999	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12235001	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs28499425	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28562614	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28675389	0.84[EUR][1000 genomes]
rs33944167	0.86[EUR][1000 genomes]
rs34614689	0.84[EUR][1000 genomes]
rs35052906	0.88[EUR][1000 genomes]
rs35721526	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36036709	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4319098	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4348499	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4380943	1.00[CEU][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4383973	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4474027	1.00[CEU][hapmap];0.84[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4612344	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4629869	1.00[CEU][hapmap];0.84[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4841215	1.00[CEU][hapmap]
rs5002814	1.00[CEU][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5002815	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5018578	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55924085	0.82[EUR][1000 genomes]
rs57000316	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57024674	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57331392	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57482128	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57580633	0.92[EUR][1000 genomes]
rs57987233	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58458097	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58596872	0.88[EUR][1000 genomes]
rs58981097	0.84[EUR][1000 genomes]
rs59201801	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59268701	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59519630	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59940446	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60051555	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60078276	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60222666	0.88[EUR][1000 genomes]
rs60857446	0.82[EUR][1000 genomes]
rs60942347	0.86[EUR][1000 genomes]
rs61594550	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61682841	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6422356	1.00[CEU][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs6601358	0.86[EUR][1000 genomes]
rs6984737	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6985140	0.86[CEU][hapmap];0.84[JPT][hapmap]
rs6986755	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs6987259	0.85[CEU][hapmap];0.84[JPT][hapmap]
rs6987746	0.80[EUR][1000 genomes]
rs6990116	1.00[CEU][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs6994452	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6995292	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs7000182	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001395	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7002917	1.00[CEU][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7009596	0.84[EUR][1000 genomes]
rs7009863	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7010154	1.00[CEU][hapmap]
rs7013369	0.82[ASN][1000 genomes]
rs7014218	0.86[EUR][1000 genomes]
rs7016632	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7018268	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018348	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73523222	0.92[EUR][1000 genomes]
rs73523224	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73523249	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73535828	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73537955	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73537959	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73537971	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73539904	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73539907	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7815297	0.86[EUR][1000 genomes]
rs7815378	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7815506	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7815644	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7818016	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7821007	0.92[EUR][1000 genomes]
rs7825464	0.82[ASN][1000 genomes]
rs7827395	0.84[EUR][1000 genomes]
rs7829677	0.82[ASN][1000 genomes]
rs7837344	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7837923	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7840161	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7846023	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9644705	0.86[EUR][1000 genomes]
rs9644706	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv981863	chr8:9446521-9455100	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9414400-9459600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:9428200-9466200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:9433600-9461000	Weak transcription	Fetal Stomach	stomach
4	chr8:9434800-9459000	Weak transcription	Primary B cells from cord blood	blood
5	chr8:9435400-9465600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:9435400-9468400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:9435600-9457600	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:9435600-9472400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:9435800-9459400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:9435800-9465400	Weak transcription	Lung	lung
11	chr8:9435800-9465600	Weak transcription	Pancreas	Pancrea
12	chr8:9435800-9472600	Weak transcription	HSMMtube	muscle
13	chr8:9437400-9468000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:9439400-9472400	Weak transcription	HSMM	muscle
15	chr8:9439600-9465600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr8:9440400-9454800	Weak transcription	GM12878-XiMat	blood
17	chr8:9440600-9465600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr8:9441200-9460600	Weak transcription	Fetal Intestine Large	intestine
19	chr8:9442600-9465400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr8:9445400-9459800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:9446400-9451000	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr8:9447000-9451000	Enhancers	Brain Anterior Caudate	brain
23	chr8:9447000-9451000	Enhancers	Brain Substantia Nigra	brain
24	chr8:9447600-9465400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr8:9447800-9457600	Weak transcription	Right Atrium	heart
26	chr8:9448000-9459600	Weak transcription	Fetal Intestine Small	intestine
27	chr8:9448400-9451000	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr8:9448600-9454000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr8:9448800-9451000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr8:9448800-9451400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr8:9449000-9460000	Weak transcription	Spleen	Spleen
32	chr8:9449200-9451000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr8:9449200-9456800	Weak transcription	Right Ventricle	heart
34	chr8:9449200-9465600	Weak transcription	Ovary	ovary
35	chr8:9449400-9451000	Enhancers	Fetal Lung	lung
36	chr8:9449800-9451200	Enhancers	Primary T cells from cord blood	blood
37	chr8:9449800-9454200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr8:9450000-9451000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr8:9450000-9451000	Enhancers	Colon Smooth Muscle	Colon
40	chr8:9450000-9451400	Enhancers	Primary B cells from peripheral blood	blood
41	chr8:9450200-9451000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr8:9450200-9451400	Enhancers	HUVEC	blood vessel
43	chr8:9450200-9454000	Weak transcription	HepG2	liver
44	chr8:9450200-9465600	Weak transcription	NHDF-Ad	bronchial
45	chr8:9450200-9470600	Weak transcription	NHLF	lung
46	chr8:9450200-9472200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr8:9450400-9451200	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr8:9450400-9453200	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr8:9450400-9453600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr8:9450600-9451200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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