Variant report

Variant	rs58458097
Chromosome Location	chr8:9475472-9475473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10086535	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10090277	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10090998	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10090999	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10093972	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10105767	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10105968	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11249940	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11249944	0.88[EUR][1000 genomes]
rs11984920	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11988208	0.90[EUR][1000 genomes]
rs11991831	0.88[EUR][1000 genomes]
rs11995167	0.90[EUR][1000 genomes]
rs12056794	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12234900	0.90[EUR][1000 genomes]
rs12234999	0.90[EUR][1000 genomes]
rs12235001	0.90[EUR][1000 genomes]
rs28495967	0.82[EUR][1000 genomes]
rs28499425	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28562614	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28675389	0.90[EUR][1000 genomes]
rs3209608	0.83[EUR][1000 genomes]
rs33944167	0.92[EUR][1000 genomes]
rs34614689	0.90[EUR][1000 genomes]
rs35052906	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35420737	0.86[EUR][1000 genomes]
rs35721526	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36036709	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4319098	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4348499	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4380943	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4383973	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4474027	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4529464	0.80[EUR][1000 genomes]
rs4612344	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4629869	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5002814	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5002815	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5018578	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55924085	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57000316	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57024674	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57331392	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57482128	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57580633	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57987233	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58596872	0.94[EUR][1000 genomes]
rs58981097	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59201801	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59268701	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59519630	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59940446	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60051555	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60078276	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60222666	0.94[EUR][1000 genomes]
rs60801852	0.88[EUR][1000 genomes]
rs60857446	0.88[EUR][1000 genomes]
rs60942347	0.92[EUR][1000 genomes]
rs61594550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61682841	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6422356	0.90[EUR][1000 genomes]
rs6601358	0.92[EUR][1000 genomes]
rs6981763	0.84[EUR][1000 genomes]
rs6984737	0.96[EUR][1000 genomes]
rs6985140	0.84[EUR][1000 genomes]
rs6986755	0.88[EUR][1000 genomes]
rs6987259	0.90[EUR][1000 genomes]
rs6987746	0.86[EUR][1000 genomes]
rs6990116	0.92[EUR][1000 genomes]
rs6994452	0.88[EUR][1000 genomes]
rs6995292	0.88[EUR][1000 genomes]
rs7000182	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7001395	0.92[EUR][1000 genomes]
rs7002917	0.96[EUR][1000 genomes]
rs7009596	0.90[EUR][1000 genomes]
rs7009863	0.88[EUR][1000 genomes]
rs7010154	0.82[EUR][1000 genomes]
rs7013369	0.83[EUR][1000 genomes]
rs7014218	0.92[EUR][1000 genomes]
rs7016632	0.96[EUR][1000 genomes]
rs7018268	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7018348	0.94[EUR][1000 genomes]
rs73523222	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73523224	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73523249	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73535828	0.94[EUR][1000 genomes]
rs73537955	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73537959	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73537971	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73539904	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73539907	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73662516	0.84[EUR][1000 genomes]
rs7813518	0.88[EUR][1000 genomes]
rs7815297	0.92[EUR][1000 genomes]
rs7815378	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7815506	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7815644	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7818016	0.94[EUR][1000 genomes]
rs7821007	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7827395	0.90[EUR][1000 genomes]
rs7829677	0.83[EUR][1000 genomes]
rs7837344	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7837923	0.94[EUR][1000 genomes]
rs7840161	1.00[EUR][1000 genomes]
rs7846023	0.94[EUR][1000 genomes]
rs9644705	0.88[EUR][1000 genomes]
rs9644706	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9450600-9480200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:9461000-9486400	Weak transcription	Fetal Intestine Small	intestine
3	chr8:9463000-9479800	Weak transcription	Dnd41	blood
4	chr8:9463200-9480600	Weak transcription	Primary T cells from cord blood	blood
5	chr8:9466200-9480000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr8:9466200-9484400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr8:9466400-9479800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr8:9466400-9483200	Weak transcription	Liver	Liver
9	chr8:9466400-9484200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr8:9466400-9485400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr8:9466400-9491000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr8:9468800-9476600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr8:9469000-9476600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr8:9470800-9476200	Weak transcription	Placenta	Placenta
15	chr8:9470800-9476800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr8:9471000-9479800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr8:9471000-9487000	Weak transcription	HepG2	liver
18	chr8:9472000-9476200	Weak transcription	HMEC	breast
19	chr8:9472400-9479000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr8:9472400-9479800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr8:9472400-9483600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr8:9472800-9479000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr8:9472800-9479000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr8:9472800-9481200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr8:9472800-9484600	Weak transcription	Small Intestine	intestine
26	chr8:9473000-9476600	Weak transcription	Brain Substantia Nigra	brain
27	chr8:9473000-9477400	Weak transcription	NH-A	brain
28	chr8:9473200-9475600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr8:9473200-9475600	Weak transcription	Left Ventricle	heart
30	chr8:9473200-9476400	Weak transcription	Brain Angular Gyrus	brain
31	chr8:9473200-9476600	Weak transcription	Right Ventricle	heart
32	chr8:9473200-9476800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr8:9473200-9477800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr8:9473200-9477800	Weak transcription	Fetal Muscle Leg	muscle
35	chr8:9473200-9478000	Weak transcription	Psoas Muscle	Psoas
36	chr8:9473200-9478000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr8:9473200-9479800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr8:9473200-9483800	Weak transcription	NHDF-Ad	bronchial
39	chr8:9473200-9484600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr8:9473200-9486000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr8:9473200-9489400	Weak transcription	HSMM	muscle
42	chr8:9473200-9490000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr8:9473200-9491000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr8:9473200-9491200	Weak transcription	HSMMtube	muscle
45	chr8:9473400-9477600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr8:9473400-9478200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr8:9473400-9490000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr8:9473600-9479800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr8:9473600-9480600	Weak transcription	Primary B cells from cord blood	blood
50	chr8:9473800-9476400	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links