Variant report

Variant	rs7013369
Chromosome Location	chr8:9404663-9404664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10086535	0.80[EUR][1000 genomes]
rs10090277	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10093972	0.87[CEU][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10105767	0.87[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10105968	0.87[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11249940	0.85[EUR][1000 genomes]
rs11984920	0.97[GIH][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12056794	1.00[ASW][hapmap];0.87[CEU][hapmap];0.88[JPT][hapmap]
rs12234900	1.00[CEU][hapmap]
rs12234999	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs12235001	1.00[CEU][hapmap]
rs28499425	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs33944167	0.87[EUR][1000 genomes]
rs35052906	0.89[EUR][1000 genomes]
rs35721526	0.82[EUR][1000 genomes]
rs36036709	0.82[EUR][1000 genomes]
rs4319098	0.87[CEU][hapmap];0.82[CHB][hapmap];0.97[GIH][hapmap]
rs4380943	0.87[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs4383973	0.87[CEU][hapmap];0.96[GIH][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs4474027	0.87[CEU][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs4612344	0.87[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4629869	0.87[CEU][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs5002814	1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5002815	0.87[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5018578	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57000316	0.82[ASN][1000 genomes]
rs57024674	0.80[EUR][1000 genomes]
rs57331392	0.80[EUR][1000 genomes]
rs57482128	0.85[EUR][1000 genomes]
rs57580633	0.82[EUR][1000 genomes]
rs57987233	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs58458097	0.83[EUR][1000 genomes]
rs58596872	0.89[EUR][1000 genomes]
rs59201801	0.82[EUR][1000 genomes]
rs59268701	0.83[EUR][1000 genomes]
rs59519630	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59940446	0.80[EUR][1000 genomes]
rs60051555	0.83[EUR][1000 genomes]
rs60078276	0.82[EUR][1000 genomes]
rs60222666	0.89[EUR][1000 genomes]
rs61594550	0.83[EUR][1000 genomes]
rs61682841	0.82[EUR][1000 genomes]
rs6422356	1.00[CEU][hapmap];0.93[GIH][hapmap]
rs6981763	0.80[EUR][1000 genomes]
rs6984737	1.00[ASW][hapmap];0.87[CEU][hapmap];0.87[GIH][hapmap];0.85[LWK][hapmap];0.83[MKK][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs6985140	0.82[ASW][hapmap];0.87[CEU][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs6990116	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs6992432	0.86[CHD][hapmap];0.88[GIH][hapmap]
rs7000182	0.82[ASN][1000 genomes]
rs7001395	1.00[CEU][hapmap]
rs7002917	0.87[CEU][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap]
rs7016632	0.87[CEU][hapmap];0.88[JPT][hapmap]
rs7018268	0.87[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7018348	0.81[ASN][1000 genomes]
rs73523224	0.82[EUR][1000 genomes]
rs73523249	0.83[EUR][1000 genomes]
rs73537955	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73537959	0.81[ASN][1000 genomes]
rs73537971	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73539904	0.82[EUR][1000 genomes]
rs73539907	0.82[EUR][1000 genomes]
rs7815378	0.80[ASN][1000 genomes]
rs7815506	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7815644	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7818016	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7821007	0.82[EUR][1000 genomes]
rs7825464	0.83[AFR][1000 genomes]
rs7829677	0.83[AFR][1000 genomes]
rs7837344	0.82[EUR][1000 genomes]
rs7837923	1.00[CEU][hapmap]
rs7840161	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7846023	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs9644705	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1030524	chr8:9183482-9412833	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1033031	chr8:9310266-9418941	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9390000-9409800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:9404000-9412000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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