Variant report

Variant	rs6987259
Chromosome Location	chr8:9622108-9622109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10086535	0.86[EUR][1000 genomes]
rs10090277	0.85[CEU][hapmap];0.84[JPT][hapmap]
rs10090998	0.86[EUR][1000 genomes]
rs10090999	0.86[EUR][1000 genomes]
rs10093972	0.94[GIH][hapmap];0.88[JPT][hapmap]
rs10105767	0.84[JPT][hapmap]
rs10105968	0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs11249940	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11249944	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11785739	0.85[EUR][1000 genomes]
rs11984920	0.97[GIH][hapmap];0.88[JPT][hapmap]
rs11988208	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11991831	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11995167	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12056794	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs12234900	0.82[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12234999	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12235001	0.85[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28495967	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28499425	0.88[EUR][1000 genomes]
rs28562614	0.86[EUR][1000 genomes]
rs28675389	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3209608	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs33944167	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34614689	1.00[EUR][1000 genomes]
rs35052906	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35420737	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35721526	0.88[EUR][1000 genomes]
rs36036709	0.88[EUR][1000 genomes]
rs4319098	0.97[GIH][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs4348499	0.84[EUR][1000 genomes]
rs4380943	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs4383973	0.96[GIH][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs4474027	0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs4529464	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4612344	0.88[JPT][hapmap]
rs4629869	0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs4841215	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs5002814	0.86[EUR][1000 genomes]
rs5002815	0.87[GIH][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs5018578	0.82[JPT][hapmap]
rs55924085	0.86[EUR][1000 genomes]
rs57024674	0.86[EUR][1000 genomes]
rs57331392	0.86[EUR][1000 genomes]
rs57482128	0.91[EUR][1000 genomes]
rs57580633	0.88[EUR][1000 genomes]
rs57987233	0.91[EUR][1000 genomes]
rs58458097	0.90[EUR][1000 genomes]
rs58596872	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59201801	0.88[EUR][1000 genomes]
rs59268701	0.90[EUR][1000 genomes]
rs59519630	0.86[EUR][1000 genomes]
rs59940446	0.86[EUR][1000 genomes]
rs60051555	0.90[EUR][1000 genomes]
rs60078276	0.88[EUR][1000 genomes]
rs60222666	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60801852	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60857446	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60942347	0.93[EUR][1000 genomes]
rs61594550	0.90[EUR][1000 genomes]
rs61682841	0.88[EUR][1000 genomes]
rs6422356	0.85[CEU][hapmap];0.85[CHB][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6601358	0.93[EUR][1000 genomes]
rs6601362	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6981763	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6984737	0.87[GIH][hapmap]
rs6985140	0.85[CHB][hapmap];0.82[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs6986755	0.82[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987746	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6990116	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs6994452	1.00[CHB][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6995292	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6999382	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7001395	0.85[CEU][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7002917	0.90[GIH][hapmap]
rs7009596	0.91[EUR][1000 genomes]
rs7010154	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7014218	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7018268	0.88[JPT][hapmap]
rs73523222	0.84[EUR][1000 genomes]
rs73523224	0.88[EUR][1000 genomes]
rs73523249	0.90[EUR][1000 genomes]
rs73537955	0.86[EUR][1000 genomes]
rs73537959	0.84[EUR][1000 genomes]
rs73537971	0.86[EUR][1000 genomes]
rs73539904	0.88[EUR][1000 genomes]
rs73539907	0.88[EUR][1000 genomes]
rs73662516	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7813518	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7815297	0.93[EUR][1000 genomes]
rs7815378	0.84[EUR][1000 genomes]
rs7815506	0.88[EUR][1000 genomes]
rs7815644	0.86[EUR][1000 genomes]
rs7821007	0.88[EUR][1000 genomes]
rs7827395	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7837344	0.88[EUR][1000 genomes]
rs7846023	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9644705	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9644706	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9550000-9627600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:9557400-9632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:9566000-9639400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:9570000-9638600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:9585200-9627600	Weak transcription	Hela-S3	cervix
6	chr8:9588600-9626000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:9603000-9638800	Weak transcription	Stomach Mucosa	stomach
8	chr8:9604200-9637200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:9605400-9628200	Strong transcription	Primary T cells from cord blood	blood
10	chr8:9607400-9623200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr8:9608400-9625400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:9608800-9626000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:9609600-9634600	Weak transcription	Colonic Mucosa	Colon
14	chr8:9611800-9625200	Weak transcription	Right Ventricle	heart
15	chr8:9616000-9634400	Weak transcription	Fetal Heart	heart
16	chr8:9616600-9627800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr8:9616800-9623200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr8:9616800-9623200	Weak transcription	Gastric	stomach
19	chr8:9616800-9623800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:9616800-9625400	Weak transcription	Esophagus	oesophagus
21	chr8:9616800-9625600	Weak transcription	Small Intestine	intestine
22	chr8:9616800-9632200	Weak transcription	Pancreas	Pancrea
23	chr8:9617000-9623200	Weak transcription	Spleen	Spleen
24	chr8:9617000-9623600	Weak transcription	NHLF	lung
25	chr8:9618000-9628600	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr8:9618400-9628600	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr8:9618400-9628800	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr8:9618400-9637200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr8:9618600-9622800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
30	chr8:9618600-9626400	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr8:9618600-9626600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr8:9618600-9628400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr8:9618600-9628600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr8:9618600-9628600	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr8:9618600-9628800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr8:9618600-9628800	Strong transcription	Liver	Liver
37	chr8:9618600-9629200	Strong transcription	Primary hematopoietic stem cells	blood
38	chr8:9618600-9629600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr8:9618600-9630000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr8:9618600-9630200	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr8:9618600-9630400	Strong transcription	Dnd41	blood
42	chr8:9618600-9631600	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr8:9618800-9625000	Strong transcription	Primary B cells from peripheral blood	blood
44	chr8:9618800-9625000	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr8:9618800-9628800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr8:9618800-9628800	Strong transcription	Placenta	Placenta
47	chr8:9618800-9629000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr8:9618800-9630400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr8:9619000-9624600	Strong transcription	Fetal Thymus	thymus
50	chr8:9619000-9624600	Strong transcription	NHDF-Ad	bronchial

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