Variant report

Variant	rs7828064
Chromosome Location	chr8:130431660-130431661
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:130424297..130426458-chr8:130429983..130431740,3	K562	blood:
2	chr8:130429538..130431900-chr8:130434547..130436688,2	MCF-7	breast:
3	chr8:130427156..130429100-chr8:130430204..130432175,2	K562	blood:

Variant related genes	Relation type
ENSG00000253926	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10105579	0.86[EUR][1000 genomes]
rs10808579	0.88[EUR][1000 genomes]
rs10808580	0.88[EUR][1000 genomes]
rs1118872	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs11787238	0.88[EUR][1000 genomes]
rs12545968	0.85[CEU][hapmap];0.80[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13250815	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1347052	0.89[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1347053	0.89[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1432360	0.83[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1432361	0.89[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1583247	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1594596	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1835841	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2579865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2579870	0.89[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2579871	0.89[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2579872	0.89[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2579879	0.89[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2630507	0.89[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2630508	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2630509	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs2630510	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2630514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2630518	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2630519	0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2719189	0.89[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2719203	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2719206	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2719211	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2719212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719214	0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2719218	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4733549	0.88[EUR][1000 genomes]
rs7015941	0.88[EUR][1000 genomes]
rs7828127	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7845472	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9694939	0.87[EUR][1000 genomes]
rs976912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429942	chr8:130397818-130460011	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv6394	chr8:130421502-130446035	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130410200-130434600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:130427000-130449000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:130428000-130432800	Weak transcription	Adipose Nuclei	Adipose
4	chr8:130428400-130432400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:130428600-130432800	Weak transcription	GM12878-XiMat	blood
6	chr8:130429200-130432600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:130429400-130437600	Enhancers	Dnd41	blood
8	chr8:130429800-130434200	Weak transcription	Thymus	Thymus
9	chr8:130430200-130435600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr8:130431000-130431800	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr8:130431200-130431800	Strong transcription	Fetal Thymus	thymus
12	chr8:130431200-130432800	Genic enhancers	K562	blood
13	chr8:130431200-130433000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:130431200-130436000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:130431600-130432400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:130431600-130432400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr8:130431600-130435800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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