Variant report

Variant	rs1118872
Chromosome Location	chr8:130435581-130435582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130429538..130431900-chr8:130434547..130436688,2	MCF-7	breast:
2	chr8:130433486..130436461-chr8:130437244..130438809,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10098856	0.82[JPT][hapmap]
rs10100977	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10103083	0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10105579	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1030626	0.90[JPT][hapmap]
rs10808579	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10808580	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1124682	0.89[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs11782132	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11787238	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11996992	0.85[JPT][hapmap]
rs12545968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12681076	0.90[JPT][hapmap]
rs13250815	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1368136	0.81[JPT][hapmap]
rs1465680	0.89[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1583247	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1594596	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1594597	0.86[JPT][hapmap]
rs1835848	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1963881	0.82[ASN][1000 genomes]
rs2007003	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs2012753	0.85[ASN][1000 genomes]
rs2217589	0.86[JPT][hapmap]
rs2395899	0.87[JPT][hapmap]
rs2579865	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs2630514	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs2719203	0.86[EUR][1000 genomes]
rs2719212	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs4733549	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733707	0.89[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs56678522	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6989293	0.86[JPT][hapmap]
rs6989619	0.86[JPT][hapmap]
rs6995168	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6998642	0.86[JPT][hapmap]
rs7015941	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs744652	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7828064	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs7828127	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7837648	0.81[JPT][hapmap]
rs891833	0.88[CEU][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9694939	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs976912	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs985688	0.85[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429942	chr8:130397818-130460011	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv6394	chr8:130421502-130446035	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3498936	chr8:130434070-130444018	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3498939	chr8:130434470-130444018	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3480631	chr8:130434987-130443051	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	esv3480632	chr8:130435024-130443088	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv3498937	chr8:130435065-130443077	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3498942	chr8:130435085-130443122	Genic enhancers Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv3498938	chr8:130435102-130442996	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3498940	chr8:130435130-130442953	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv3480633	chr8:130435190-130442879	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	nsv499239	chr8:130435195-130442879	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv20800	chr8:130435196-130442658	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	esv3498943	chr8:130435196-130442879	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130427000-130449000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:130429400-130437600	Enhancers	Dnd41	blood
3	chr8:130430200-130435600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:130431200-130436000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:130431600-130435800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr8:130432800-130436600	Enhancers	Fetal Thymus	thymus
7	chr8:130433200-130436600	Genic enhancers	K562	blood
8	chr8:130434200-130435600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr8:130434200-130436400	Enhancers	Thymus	Thymus
10	chr8:130434800-130443800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:130435200-130435600	Weak transcription	Spleen	Spleen
12	chr8:130435200-130436600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr8:130435200-130436600	Weak transcription	Right Atrium	heart
14	chr8:130435400-130436200	Enhancers	Fetal Muscle Trunk	muscle

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