Variant report

Variant	rs2007003
Chromosome Location	chr8:130460135-130460136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:130459630..130462121-chr8:130462300..130464633,3	K562	blood:
2	chr8:130444302..130447418-chr8:130460105..130463114,3	MCF-7	breast:
3	chr8:130450871..130455095-chr8:130457353..130461574,6	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10103083	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10105579	0.84[ASN][1000 genomes]
rs1030626	0.85[JPT][hapmap];0.82[MEX][hapmap];0.83[EUR][1000 genomes]
rs10808579	0.85[ASN][1000 genomes]
rs10808580	0.85[ASN][1000 genomes]
rs1118872	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1124682	1.00[CEU][hapmap];0.84[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11787238	0.85[ASN][1000 genomes]
rs11996992	0.84[JPT][hapmap]
rs12545968	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs12681076	0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs13250815	0.85[ASN][1000 genomes]
rs1465680	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1583247	0.84[ASN][1000 genomes]
rs1594596	0.85[ASN][1000 genomes]
rs1963881	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2012753	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4733549	0.85[ASN][1000 genomes]
rs4733707	1.00[CEU][hapmap];0.84[CHB][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56678522	0.84[ASN][1000 genomes]
rs6989619	0.80[JPT][hapmap]
rs7015941	0.85[ASN][1000 genomes]
rs744652	0.87[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7828127	0.85[ASN][1000 genomes]
rs7831732	0.96[CEU][hapmap];0.86[GIH][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs891833	0.81[JPT][hapmap]
rs9694939	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015611	chr8:130449321-130502086	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130451400-130462000	Weak transcription	Thymus	Thymus
2	chr8:130458800-130461600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:130458800-130463400	Enhancers	Dnd41	blood
4	chr8:130459200-130461200	Weak transcription	Fetal Thymus	thymus
5	chr8:130459400-130461400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:130459400-130464600	Genic enhancers	K562	blood
7	chr8:130459400-130471800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr8:130459600-130461400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:130459600-130461800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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