Variant report

Variant	rs744652
Chromosome Location	chr8:130453219-130453220
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130450871..130455095-chr8:130457353..130461574,6	MCF-7	breast:
2	chr8:130451770..130455234-chr8:130460801..130462723,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10098856	0.82[JPT][hapmap]
rs10103083	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10105579	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1030626	0.90[JPT][hapmap]
rs10808579	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10808580	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1118872	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1124682	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11782132	0.82[ASN][1000 genomes]
rs11787238	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11996992	0.85[JPT][hapmap]
rs12545968	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12681076	0.90[JPT][hapmap]
rs13250815	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1368136	0.81[JPT][hapmap]
rs1465680	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1583247	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1594596	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1594597	0.86[JPT][hapmap]
rs1835848	0.82[ASN][1000 genomes]
rs1963881	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2007003	0.87[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2012753	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2217589	0.86[JPT][hapmap]
rs2395899	0.87[JPT][hapmap]
rs4733549	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4733707	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56678522	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6989293	0.86[JPT][hapmap]
rs6989619	0.86[JPT][hapmap]
rs6998642	0.86[JPT][hapmap]
rs7015941	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7828127	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7831732	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs7837648	0.81[JPT][hapmap]
rs891833	0.95[JPT][hapmap]
rs9694939	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429942	chr8:130397818-130460011	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1015611	chr8:130449321-130502086	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130448600-130458800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr8:130451400-130462000	Weak transcription	Thymus	Thymus
3	chr8:130452000-130454200	Genic enhancers	K562	blood
4	chr8:130452400-130458200	Weak transcription	Fetal Thymus	thymus
5	chr8:130452600-130457800	Weak transcription	Dnd41	blood
6	chr8:130452800-130453800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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