Variant report

Variant	rs4733707
Chromosome Location	chr8:130459567-130459568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130450871..130455095-chr8:130457353..130461574,6	MCF-7	breast:
2	chr8:130438946..130441544-chr8:130456592..130459697,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10098856	0.86[JPT][hapmap]
rs10103083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105579	0.93[ASN][1000 genomes]
rs1030626	0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs10808579	0.94[ASN][1000 genomes]
rs10808580	0.94[ASN][1000 genomes]
rs1118872	0.89[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1124682	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11787238	0.94[ASN][1000 genomes]
rs11996992	0.90[JPT][hapmap]
rs12545968	0.89[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12681076	0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs13250815	0.94[ASN][1000 genomes]
rs1368136	0.86[JPT][hapmap]
rs1465680	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1583247	0.93[ASN][1000 genomes]
rs1594596	0.94[ASN][1000 genomes]
rs1594597	0.82[JPT][hapmap]
rs1963881	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2007003	1.00[CEU][hapmap];0.84[CHB][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2012753	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2217589	0.81[JPT][hapmap]
rs2395899	0.82[JPT][hapmap]
rs4733549	0.94[ASN][1000 genomes]
rs56678522	0.93[ASN][1000 genomes]
rs6989293	0.82[JPT][hapmap]
rs6989619	0.80[JPT][hapmap]
rs6998642	0.82[JPT][hapmap]
rs7015941	0.94[ASN][1000 genomes]
rs744652	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7828127	0.94[ASN][1000 genomes]
rs7831732	0.80[ASW][hapmap];0.96[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7837648	0.86[JPT][hapmap]
rs891833	0.91[JPT][hapmap]
rs9694939	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429942	chr8:130397818-130460011	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1015611	chr8:130449321-130502086	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130451400-130462000	Weak transcription	Thymus	Thymus
2	chr8:130458800-130459600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:130458800-130461600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:130458800-130463400	Enhancers	Dnd41	blood
5	chr8:130459200-130459600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr8:130459200-130459600	Enhancers	GM12878-XiMat	blood
7	chr8:130459200-130461200	Weak transcription	Fetal Thymus	thymus
8	chr8:130459400-130459600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:130459400-130461400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr8:130459400-130464600	Genic enhancers	K562	blood
11	chr8:130459400-130471800	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links