Variant report

Variant	rs7838798
Chromosome Location	chr8:69417431-69417432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11986509	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap]
rs16934676	0.89[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs16934677	0.88[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs2380469	0.88[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs2380470	0.89[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs2380471	0.90[ASN][1000 genomes]
rs4474010	0.89[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs57831430	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58414828	0.92[ASN][1000 genomes]
rs59742505	0.92[ASN][1000 genomes]
rs6472400	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6472401	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6472403	0.90[ASN][1000 genomes]
rs6472404	0.90[ASN][1000 genomes]
rs6981661	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6981803	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6982414	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6982892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6986697	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6986715	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73266559	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73266567	0.90[ASN][1000 genomes]
rs73683538	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7812638	0.88[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7820314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7821486	0.89[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs7821720	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap]
rs7821782	0.92[ASN][1000 genomes]
rs7822196	0.90[ASN][1000 genomes]
rs7822229	0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs7822332	0.89[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs7822643	0.89[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs7823068	0.88[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7826853	0.89[CHB][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs7838651	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7838662	1.00[ASW][hapmap];0.89[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs7839616	0.90[ASN][1000 genomes]
rs7840898	0.89[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs7841510	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1023810	chr8:69308665-69440129	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539644	chr8:69308665-69440129	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv890981	chr8:69413110-69534542	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links