Variant report

Variant rs785502
Chromosome Location chr1:46581444-46581445
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46540400-46595200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:46541200-46595800 Weak transcription Fetal Intestine Small intestine
3 chr1:46562400-46595800 Weak transcription Skeletal Muscle Male skeletal muscle
4 chr1:46565600-46593200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr1:46566800-46594000 Weak transcription Thymus Thymus
6 chr1:46567800-46595200 Weak transcription Primary T cells from cord blood blood
7 chr1:46574000-46595200 Weak transcription HSMM muscle
8 chr1:46576000-46583400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr1:46576000-46594200 Weak transcription HMEC breast
10 chr1:46576600-46592000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr1:46576800-46593200 Weak transcription Hela-S3 cervix
12 chr1:46577200-46583200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr1:46577200-46583400 Weak transcription Lung lung
14 chr1:46577200-46593800 Weak transcription Right Ventricle heart
15 chr1:46579400-46581800 Weak transcription Left Ventricle heart
16 chr1:46579600-46581600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr1:46579800-46594400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr1:46580200-46582000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
19 chr1:46580200-46583200 Weak transcription HepG2 liver
20 chr1:46580400-46593400 Weak transcription Right Atrium heart
21 chr1:46580600-46581600 Enhancers H1 Cell Line embryonic stem cell
22 chr1:46580600-46581600 Enhancers HUES64 Cell Line embryonic stem cell
23 chr1:46580600-46581800 Enhancers HUES6 Cell Line embryonic stem cell
24 chr1:46580600-46581800 Enhancers iPS-18 Cell Line embryonic stem cell
25 chr1:46580600-46582800 Weak transcription Psoas Muscle Psoas
26 chr1:46580800-46581600 Enhancers iPS-15b Cell Line embryonic stem cell
27 chr1:46580800-46581600 Enhancers Brain Substantia Nigra brain
28 chr1:46580800-46581800 Enhancers Cortex derived primary cultured neurospheres brain
29 chr1:46580800-46581800 Enhancers Pancreatic Islets Pancreatic Islet
30 chr1:46581000-46593800 Weak transcription Brain Germinal Matrix brain
31 chr1:46581200-46581600 Enhancers Fetal Heart heart
32 chr1:46581200-46581600 Flanking Active TSS GM12878-XiMat blood
33 chr1:46581200-46582000 Enhancers K562 blood
34 chr1:46581200-46592000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr1:46581400-46581600 Genic enhancers H9 Derived Neuron Cultured Cells ES cell derived
36 chr1:46581400-46581600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr1:46581400-46581600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr1:46581400-46589200 Weak transcription Adipose Nuclei Adipose

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