Variant report

Variant	rs4076006
Chromosome Location	chr1:46438076-46438077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:46435373..46439642-chr1:46440043..46443135,7	K562	blood:
2	chr1:46437212..46439415-chr1:46449491..46452410,2	MCF-7	breast:
3	chr1:46436838..46439241-chr1:46440848..46442533,3	K562	blood:

Extended variants
information (count: 219 )
Associated
traits (count: 21 )

rSNPs within LD-proxies of this variant (count:192)

rs_ID	r²[population]
rs10749860	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10789474	0.87[JPT][hapmap]
rs10789475	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10789481	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10789485	0.92[CHD][hapmap]
rs10789486	0.92[CHD][hapmap]
rs10789487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1085243	0.88[ASW][hapmap];1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap]
rs10890347	0.86[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap]
rs10890352	0.84[AMR][1000 genomes]
rs10890354	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10890361	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10890363	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10890365	0.90[CHD][hapmap]
rs10890367	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10890369	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10890370	0.92[CHD][hapmap]
rs10890373	0.90[CHD][hapmap]
rs10890378	0.92[CHD][hapmap]
rs10890380	0.92[CHD][hapmap]
rs10890381	0.92[CHD][hapmap]
rs10890383	1.00[CEU][hapmap]
rs11211189	0.82[AMR][1000 genomes]
rs11211197	0.82[AMR][1000 genomes]
rs11211198	0.84[AMR][1000 genomes]
rs11211199	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11211200	0.90[CHD][hapmap]
rs11211203	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11211204	0.89[CHD][hapmap]
rs11211208	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11211213	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11211224	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11211230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11211232	0.92[CHD][hapmap]
rs11211234	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211239	0.92[CHD][hapmap]
rs11211241	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211248	0.92[CHD][hapmap]
rs11211251	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11211252	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11576305	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11579634	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11589562	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11810993	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12021587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12032115	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12049588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12076580	0.87[CHD][hapmap]
rs12132540	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[YRI][hapmap]
rs12133129	0.92[CHD][hapmap]
rs12139630	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12143096	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144263	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12405451	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12409773	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12410070	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12410071	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12411269	0.82[AMR][1000 genomes]
rs12561806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12564541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12565042	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12739439	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12740503	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12757810	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12760175	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1613296	0.82[CHD][hapmap]
rs1622208	0.90[CHD][hapmap]
rs1707321	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1707322	0.82[CHD][hapmap]
rs1707333	1.00[CEU][hapmap];0.84[JPT][hapmap];0.83[YRI][hapmap]
rs1707336	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs1707340	1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1768802	0.82[CHD][hapmap]
rs1768809	0.83[ASW][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.83[YRI][hapmap];0.82[ASN][1000 genomes]
rs1768816	0.88[ASW][hapmap];1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2275426	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2486445	0.88[ASW][hapmap];0.84[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];0.93[YRI][hapmap]
rs2486447	0.84[AFR][1000 genomes]
rs34102169	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34175029	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34325724	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35154628	0.81[EUR][1000 genomes]
rs35743647	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35945607	0.83[EUR][1000 genomes]
rs4073846	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073847	0.87[CHD][hapmap]
rs4134386	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4233500	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4298677	0.90[CHD][hapmap]
rs4376778	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4390216	0.90[CHD][hapmap]
rs4440807	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4454479	0.92[CHD][hapmap]
rs4457512	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4504835	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4545281	0.94[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4579700	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4626927	0.94[ASW][hapmap];0.92[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs4638056	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4660317	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4660318	0.90[CHD][hapmap]
rs4660319	0.88[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.98[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4660321	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4660322	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4660334	0.92[CHD][hapmap]
rs4660885	0.96[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap]
rs4660898	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4660905	0.92[CHD][hapmap]
rs4660910	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap]
rs61102033	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61783200	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61783217	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61783220	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6429580	0.89[CHD][hapmap]
rs6429582	0.88[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6656022	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6656992	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6660835	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6661163	0.80[AMR][1000 genomes]
rs6661593	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6661910	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6662548	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6666743	0.88[ASW][hapmap];0.96[CEU][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6668284	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6669522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6672115	0.90[CHD][hapmap]
rs6672898	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6675259	0.89[CHB][hapmap]
rs6675726	0.96[CEU][hapmap];0.85[JPT][hapmap]
rs6675946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6677007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6677777	0.87[CHD][hapmap]
rs6680211	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6680380	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6680428	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6682683	0.90[CHD][hapmap]
rs6683274	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs6686134	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6688365	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6694340	0.88[ASW][hapmap];0.96[CEU][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6695809	0.84[AMR][1000 genomes]
rs6697557	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6697843	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6698247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6700597	0.95[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs6701614	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7515491	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7520050	0.86[YRI][hapmap]
rs7522601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7524495	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs7526532	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7526678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7531911	0.90[CHD][hapmap]
rs7533956	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7538978	0.82[CHD][hapmap]
rs7539932	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7540325	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7540578	0.86[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap]
rs7540699	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7550746	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7556436	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7556615	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs785464	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs785465	0.82[CHD][hapmap]
rs785468	0.82[CHD][hapmap]
rs785471	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs785472	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs785473	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs785479	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs785480	0.92[CHD][hapmap]
rs785481	0.88[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap]
rs785485	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap]
rs785489	1.00[CEU][hapmap];0.84[JPT][hapmap];0.80[YRI][hapmap]
rs785491	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap]
rs785494	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap]
rs785495	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap]
rs785502	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap]
rs785503	0.88[ASW][hapmap];1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.83[YRI][hapmap]
rs785508	0.85[JPT][hapmap]
rs785509	0.85[JPT][hapmap]
rs785511	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs785512	0.82[CHD][hapmap]
rs785520	0.88[ASW][hapmap];1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.83[YRI][hapmap]
rs809774	0.85[JPT][hapmap]
rs809775	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap];0.80[ASN][1000 genomes]
rs9429088	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9429183	1.00[CEU][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes]
rs946524	0.92[CHD][hapmap]
rs946527	0.92[CHD][hapmap]
rs946528	0.88[CHB][hapmap]
rs946529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9787208	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932680	chr1:45935520-46686477	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
2	nsv868828	chr1:45953923-46686477	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
3	nsv871928	chr1:46024701-46609736	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
4	nsv1003049	chr1:46144479-46476149	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
5	nsv1008219	chr1:46160098-46493958	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
6	nsv534943	chr1:46160098-46493958	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
7	nsv1000498	chr1:46171836-46438252	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
8	nsv1007501	chr1:46184925-46439533	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
9	nsv534944	chr1:46184925-46439533	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
10	nsv1009355	chr1:46189258-46463012	Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
11	nsv546158	chr1:46216575-46495434	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
12	nsv870911	chr1:46216575-46498375	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
13	nsv431268	chr1:46223080-46495480	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
14	nsv524147	chr1:46236098-46438076	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
15	nsv1015136	chr1:46244432-46439533	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
16	nsv1003517	chr1:46244432-46609881	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
17	nsv1007759	chr1:46248667-46493959	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
18	nsv534945	chr1:46248667-46493959	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
19	nsv916232	chr1:46248686-46493918	Genic enhancers Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
20	nsv1009527	chr1:46286329-46520127	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
21	nsv546161	chr1:46311275-46498375	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
22	nsv1009474	chr1:46320433-46557734	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
23	nsv1005189	chr1:46335186-46949309	Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
24	nsv534946	chr1:46335186-46949309	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
25	esv2761743	chr1:46339858-47026743	Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
26	nsv829737	chr1:46352900-46506424	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
27	nsv1000557	chr1:46383876-46591182	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:21)

SNP	Gene	Cis/trans	Tissue	Source
rs4076006	CCDC163P	cis	Esophagus Mucosa	GTEx
rs4076006	CCDC163P	cis	Nerve Tibial	GTEx
rs4076006	CCDC163P	cis	Artery Aorta	GTEx
rs4076006	CCDC163P	cis	Heart Left Ventricle	GTEx
rs4076006	LOC126661	Cis_1M	lymphoblastoid	RTeQTL
rs4076006	CCDC163P	cis	Muscle Skeletal	GTEx
rs4076006	IPP	cis	lymphoblastoid	seeQTL
rs4076006	CCDC163P	cis	Whole Blood	GTEx
rs4076006	GPBP1L1	cis	Lymphoblastoid	GTEx
rs4076006	MAST2	cis	Artery Aorta	GTEx
rs4076006	CCDC163P	cis	Stomach	GTEx
rs4076006	CCDC163P	cis	Skin Sun Exposed Lower leg	GTEx
rs4076006	CCDC163P	cis	lung	GTEx
rs4076006	MAST2	cis	Artery Tibial	GTEx
rs4076006	CCDC163P	cis	Esophagus Muscularis	GTEx
rs4076006	CCDC163P	cis	Artery Tibial	GTEx
rs4076006	CCDC163P	cis	Thyroid	GTEx
rs4076006	CMPK1	cis	cerebellum	SCAN
rs4076006	CYP4Z2P	cis	cerebellum	SCAN
rs4076006	IPP	Cis_1M	lymphoblastoid	RTeQTL
rs4076006	CYP4Z2P	cis	parietal	SCAN

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:46420200-46440200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:46420400-46443000	Weak transcription	Fetal Lung	lung
3	chr1:46420600-46443000	Weak transcription	Adipose Nuclei	Adipose
4	chr1:46420600-46455800	Weak transcription	HUVEC	blood vessel
5	chr1:46420800-46439800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:46420800-46439800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:46420800-46444600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr1:46420800-46445200	Weak transcription	Pancreas	Pancrea
9	chr1:46423600-46440400	Weak transcription	HMEC	breast
10	chr1:46423800-46439400	Weak transcription	Thymus	Thymus
11	chr1:46425200-46444800	Weak transcription	Fetal Kidney	kidney
12	chr1:46425200-46444800	Weak transcription	NH-A	brain
13	chr1:46425200-46446400	Weak transcription	GM12878-XiMat	blood
14	chr1:46426800-46441200	Weak transcription	Primary B cells from cord blood	blood
15	chr1:46426800-46460000	Weak transcription	Psoas Muscle	Psoas
16	chr1:46427000-46440600	Weak transcription	Liver	Liver
17	chr1:46434600-46438200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr1:46435000-46438600	Strong transcription	Fetal Brain Female	brain
19	chr1:46435000-46438600	Strong transcription	Fetal Muscle Leg	muscle
20	chr1:46435200-46440000	Weak transcription	Osteobl	bone
21	chr1:46435200-46444400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr1:46435200-46444800	Weak transcription	NHDF-Ad	bronchial
23	chr1:46435200-46461000	Weak transcription	K562	blood
24	chr1:46435400-46446200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr1:46435800-46438600	Strong transcription	Skeletal Muscle Male	skeletal muscle
26	chr1:46435800-46439200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr1:46435800-46445000	Weak transcription	NHLF	lung
28	chr1:46436000-46444400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr1:46436200-46438200	Strong transcription	Dnd41	blood
30	chr1:46436200-46444200	Weak transcription	Hela-S3	cervix
31	chr1:46436200-46468800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr1:46436400-46438600	Strong transcription	Fetal Muscle Trunk	muscle
33	chr1:46436600-46438400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr1:46436600-46438400	Enhancers	Fetal Intestine Large	intestine
35	chr1:46436600-46438400	Strong transcription	Fetal Stomach	stomach
36	chr1:46436600-46438800	Strong transcription	HepG2	liver
37	chr1:46436800-46438200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:46436800-46438200	Genic enhancers	Duodenum Mucosa	Duodenum
39	chr1:46436800-46438200	Genic enhancers	Fetal Intestine Small	intestine
40	chr1:46436800-46438200	Genic enhancers	Rectal Mucosa Donor 31	rectum
41	chr1:46436800-46438200	Strong transcription	Right Ventricle	heart
42	chr1:46436800-46438200	Strong transcription	HSMMtube	muscle
43	chr1:46436800-46438400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr1:46436800-46438400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr1:46436800-46438600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr1:46436800-46438600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr1:46436800-46438600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr1:46436800-46438600	Strong transcription	Fetal Heart	heart
49	chr1:46436800-46438600	Genic enhancers	Sigmoid Colon	Sigmoid Colon
50	chr1:46436800-46438600	Strong transcription	A549	lung

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