The 2.0 version of rSNPBase

Variant report

Variant rs12565042
Chromosome Location chr1:46299110-46299111
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46270000-46299600 Weak transcription Spleen Spleen
2 chr1:46270200-46317000 Weak transcription Gastric stomach
3 chr1:46270400-46299400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr1:46270400-46300000 Weak transcription Aorta Aorta
5 chr1:46270400-46306600 Weak transcription Ovary ovary
6 chr1:46270400-46309600 Weak transcription Brain Inferior Temporal Lobe brain
7 chr1:46270400-46313400 Weak transcription Small Intestine intestine
8 chr1:46270600-46299200 Weak transcription Placenta Amnion Placenta Amnion
9 chr1:46270600-46305800 Weak transcription Colon Smooth Muscle Colon
10 chr1:46270600-46314000 Weak transcription H1 Cell Line embryonic stem cell
11 chr1:46270800-46306000 Weak transcription Rectal Smooth Muscle rectum
12 chr1:46270800-46307800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
13 chr1:46271400-46309400 Weak transcription Fetal Kidney kidney
14 chr1:46272000-46306800 Weak transcription Fetal Brain Male brain
15 chr1:46274600-46309200 Weak transcription Hela-S3 cervix
16 chr1:46278800-46300400 Weak transcription Primary B cells from cord blood blood
17 chr1:46278800-46306400 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr1:46281600-46302600 Weak transcription Psoas Muscle Psoas
19 chr1:46281800-46299200 Weak transcription Muscle Satellite Cultured Cells --
20 chr1:46281800-46306400 Weak transcription NH-A brain
21 chr1:46281800-46309200 Weak transcription NHLF lung
22 chr1:46282200-46306400 Weak transcription NHDF-Ad bronchial
23 chr1:46285800-46306200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr1:46287000-46300600 Weak transcription Brain Substantia Nigra brain
25 chr1:46287000-46301800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr1:46287400-46315600 Weak transcription Cortex derived primary cultured neurospheres brain
27 chr1:46288600-46302400 Weak transcription Primary B cells from peripheral blood blood
28 chr1:46288800-46299800 Weak transcription Brain Cingulate Gyrus brain
29 chr1:46288800-46306400 Weak transcription ES-I3 Cell Line embryonic stem cell
30 chr1:46288800-46315600 Weak transcription Primary T cells from cord blood blood
31 chr1:46289800-46302800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:46290200-46302200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
33 chr1:46291000-46302600 Weak transcription Fetal Lung lung
34 chr1:46291800-46309200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
35 chr1:46291800-46309400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr1:46292200-46315000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr1:46292400-46300800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr1:46292600-46306200 Weak transcription Osteobl bone
39 chr1:46292600-46306400 Weak transcription Fetal Heart heart
40 chr1:46293000-46302000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
41 chr1:46293000-46306600 Weak transcription Left Ventricle heart
42 chr1:46293400-46301600 Weak transcription GM12878-XiMat blood
43 chr1:46293600-46314000 Weak transcription HSMMtube muscle
44 chr1:46294600-46300000 Weak transcription Pancreas Pancrea
45 chr1:46295400-46309000 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr1:46295400-46312600 Weak transcription HSMM muscle
47 chr1:46295600-46300000 Weak transcription H9 Cell Line embryonic stem cell
48 chr1:46295800-46314200 Weak transcription iPS-18 Cell Line embryonic stem cell
49 chr1:46296000-46306600 Weak transcription Fetal Stomach stomach
50 chr1:46296200-46305600 Weak transcription HepG2 liver

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Last update: Aug 31, 2015