The 2.0 version of rSNPBase

Variant report

Variant rs6656022
Chromosome Location chr1:46394315-46394316
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46373000-46395000 Weak transcription Gastric stomach
2 chr1:46379600-46394600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:46379800-46394600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
4 chr1:46379800-46395000 Weak transcription Brain Cingulate Gyrus brain
5 chr1:46379800-46395200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr1:46380400-46394800 Weak transcription NHDF-Ad bronchial
7 chr1:46380400-46395000 Weak transcription NHLF lung
8 chr1:46380600-46394800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr1:46380800-46394400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
10 chr1:46380800-46395000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr1:46380800-46404600 Weak transcription Rectal Smooth Muscle rectum
12 chr1:46387600-46425000 Weak transcription Fetal Muscle Trunk muscle
13 chr1:46388000-46395800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
14 chr1:46388200-46395000 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr1:46388200-46396400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
16 chr1:46388400-46395000 Weak transcription Stomach Smooth Muscle stomach
17 chr1:46388400-46408200 Weak transcription Brain Germinal Matrix brain
18 chr1:46388800-46394800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr1:46388800-46395000 Weak transcription Right Ventricle heart
20 chr1:46389000-46394400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
21 chr1:46389000-46394800 Weak transcription Fetal Intestine Small intestine
22 chr1:46389000-46394800 Weak transcription Left Ventricle heart
23 chr1:46389000-46395000 Weak transcription Fetal Stomach stomach
24 chr1:46389000-46410400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr1:46389800-46396400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr1:46390800-46397600 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr1:46391200-46394400 Weak transcription Osteobl bone
28 chr1:46391200-46395000 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr1:46391600-46394800 Weak transcription HSMMtube muscle
30 chr1:46391600-46395000 Weak transcription Fetal Muscle Leg muscle
31 chr1:46391800-46395000 Weak transcription Fetal Adrenal Gland Adrenal Gland
32 chr1:46391800-46408000 Weak transcription Primary B cells from cord blood blood
33 chr1:46392200-46394600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr1:46392200-46394600 Weak transcription Cortex derived primary cultured neurospheres brain
35 chr1:46392200-46394600 Weak transcription HSMM muscle
36 chr1:46392400-46394400 Weak transcription Primary hematopoietic stem cells blood
37 chr1:46392400-46394400 Weak transcription Small Intestine intestine
38 chr1:46392400-46394600 Weak transcription Skeletal Muscle Female skeletal muscle
39 chr1:46392400-46395000 Weak transcription Primary B cells from peripheral blood blood
40 chr1:46392400-46395000 Weak transcription Duodenum Mucosa Duodenum
41 chr1:46392600-46394400 Weak transcription Primary hematopoietic stem cells short term culture blood
42 chr1:46392600-46394600 Weak transcription H1 Cell Line embryonic stem cell
43 chr1:46392600-46394800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
44 chr1:46392600-46394800 Weak transcription GM12878-XiMat blood
45 chr1:46392600-46395000 Weak transcription H9 Cell Line embryonic stem cell
46 chr1:46392600-46395600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
47 chr1:46392600-46410400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr1:46392600-46411200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
49 chr1:46393200-46394800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr1:46393200-46394800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015