The 2.0 version of rSNPBase

Variant report

Variant rs6668284
Chromosome Location chr1:46354510-46354511
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46330200-46357600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr1:46332200-46357400 Weak transcription Cortex derived primary cultured neurospheres brain
3 chr1:46333800-46357400 Weak transcription iPS-18 Cell Line embryonic stem cell
4 chr1:46336600-46356800 Weak transcription Small Intestine intestine
5 chr1:46336600-46357600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
6 chr1:46337800-46356000 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr1:46338000-46357400 Weak transcription Hela-S3 cervix
8 chr1:46338400-46357600 Weak transcription Fetal Intestine Large intestine
9 chr1:46339200-46355000 Weak transcription Fetal Intestine Small intestine
10 chr1:46342200-46357000 Weak transcription HUVEC blood vessel
11 chr1:46342200-46391200 Weak transcription Primary hematopoietic stem cells short term culture blood
12 chr1:46346400-46357000 Weak transcription Left Ventricle heart
13 chr1:46347200-46357400 Weak transcription Muscle Satellite Cultured Cells --
14 chr1:46347400-46357200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr1:46347400-46357400 Weak transcription NH-A brain
16 chr1:46347400-46357400 Weak transcription NHDF-Ad bronchial
17 chr1:46347400-46378400 Weak transcription Brain Germinal Matrix brain
18 chr1:46349600-46369000 Weak transcription Dnd41 blood
19 chr1:46349800-46357600 Weak transcription Rectal Smooth Muscle rectum
20 chr1:46350000-46357400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr1:46350600-46354600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr1:46350600-46357600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr1:46350800-46378800 Weak transcription K562 blood
24 chr1:46351000-46356800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr1:46351000-46357000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr1:46351600-46355600 Weak transcription Stomach Mucosa stomach
27 chr1:46352400-46357600 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr1:46352600-46357600 Weak transcription Duodenum Mucosa Duodenum
29 chr1:46353000-46356800 Weak transcription Fetal Muscle Leg muscle
30 chr1:46353400-46355000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr1:46353400-46357400 Weak transcription HSMM muscle
32 chr1:46353400-46357800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr1:46353400-46357800 Weak transcription Skeletal Muscle Male skeletal muscle
34 chr1:46353600-46354600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
35 chr1:46353600-46357200 Weak transcription Osteobl bone
36 chr1:46353600-46357400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr1:46353600-46357600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr1:46353800-46355600 Weak transcription Rectal Mucosa Donor 31 rectum
39 chr1:46353800-46355800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr1:46353800-46357000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr1:46353800-46357000 Weak transcription Psoas Muscle Psoas
42 chr1:46353800-46357000 Weak transcription A549 lung
43 chr1:46353800-46357400 Weak transcription HepG2 liver
44 chr1:46353800-46357400 Weak transcription HSMMtube muscle
45 chr1:46353800-46357600 Weak transcription Right Atrium heart
46 chr1:46353800-46357600 Weak transcription Skeletal Muscle Female skeletal muscle
47 chr1:46354200-46354800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
48 chr1:46354400-46357600 Weak transcription Fetal Stomach stomach

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Last update: Aug 31, 2015